Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120691.seq
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      26   0.40 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.8  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
 Frame = +1

Query: 172 RTRKNFTTVALICWVKTLWPRRPNNSACRPVHGGGIGDVQHSHSVTV-QSAAGQQLHDSV 348
           R  ++F  V L C  ++L   R   SAC P     +      H V V Q  A   LH  V
Sbjct: 26  RDDEDFVDVTLACDGRSLKAHRVVLSACSPYFRELLKSTPCKHPVIVLQDVAFSDLHALV 85

Query: 349 AQARHSAAKHTERS 390
               H      +RS
Sbjct: 86  EFIYHGEVNVHQRS 99


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/34 (35%), Positives = 13/34 (38%)
 Frame = -2

Query: 192  CKIFARTPAANLAQTMPEIYSNRSAGTRAALPCP 91
            C+   RTP   LAQ   E  S R        P P
Sbjct: 1333 CRNSRRTPVPRLAQDSSEDESYRGPSASGGRPVP 1366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,607
Number of Sequences: 438
Number of extensions: 4031
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)