Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120691.seq
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19760.1 68418.m02349 dicarboxylate/tricarboxylate carrier (D...    29   3.0  
At4g27800.3 68417.m03994 protein phosphatase 2C PPH1 / PP2C PPH1...    28   6.9  
At4g27800.2 68417.m03993 protein phosphatase 2C PPH1 / PP2C PPH1...    28   6.9  
At4g27800.1 68417.m03992 protein phosphatase 2C PPH1 / PP2C PPH1...    28   6.9  
At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family...    28   6.9  
At1g30490.1 68414.m03727 homeobox-leucine zipper transcription f...    28   6.9  
At1g18190.1 68414.m02262 expressed protein similar to golgin-84 ...    28   6.9  
At1g10020.1 68414.m01130 expressed protein                             28   6.9  
At1g68490.1 68414.m07824 expressed protein                             27   9.2  

>At5g19760.1 68418.m02349 dicarboxylate/tricarboxylate carrier (DTC)
           identical to dicarboxylate/tricarboxylate carrier
           [Arabidopsis thaliana] GI:19913113
          Length = 298

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 669 LTALAADVRKVAFWNMLGCLPARVASSAM*LNMLADADSGAK 544
           LT ++AD   +A W   GC P  V + A+ + MLA  D  A+
Sbjct: 154 LTRISADEGVLALWK--GCGPTVVRAMALNMGMLASYDQSAE 193


>At4g27800.3 68417.m03994 protein phosphatase 2C PPH1 / PP2C PPH1
           (PPH1) identical to SP|P49599|P2C3_ARATH Protein
           phosphatase 2C PPH1 (EC 3.1.3.16) (PP2C) {Arabidopsis
           thaliana}; similar to protein phosphatase-2C; PP2C
           (GI:3643090) [Mesembryanthemum crystallinum]
          Length = 326

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 219 LYPTYQRHRCKIFARTPAANLAQTMP 142
           +YPTY RHRC   A    ++L    P
Sbjct: 32  VYPTYGRHRCSAIAIDAPSSLTGVTP 57


>At4g27800.2 68417.m03993 protein phosphatase 2C PPH1 / PP2C PPH1
           (PPH1) identical to SP|P49599|P2C3_ARATH Protein
           phosphatase 2C PPH1 (EC 3.1.3.16) (PP2C) {Arabidopsis
           thaliana}; similar to protein phosphatase-2C; PP2C
           (GI:3643090) [Mesembryanthemum crystallinum]
          Length = 335

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 219 LYPTYQRHRCKIFARTPAANLAQTMP 142
           +YPTY RHRC   A    ++L    P
Sbjct: 32  VYPTYGRHRCSAIAIDAPSSLTGVTP 57


>At4g27800.1 68417.m03992 protein phosphatase 2C PPH1 / PP2C PPH1
           (PPH1) identical to SP|P49599|P2C3_ARATH Protein
           phosphatase 2C PPH1 (EC 3.1.3.16) (PP2C) {Arabidopsis
           thaliana}; similar to protein phosphatase-2C; PP2C
           (GI:3643090) [Mesembryanthemum crystallinum]
          Length = 388

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 219 LYPTYQRHRCKIFARTPAANLAQTMP 142
           +YPTY RHRC   A    ++L    P
Sbjct: 32  VYPTYGRHRCSAIAIDAPSSLTGVTP 57


>At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family
           protein 
          Length = 660

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +2

Query: 287 CNIPIPLPFNQQLANNYMTLLLKHATLPPNIQSAVESRRFPHIN 418
           CN P P P +QQ A    T +   A   P++ +       PH N
Sbjct: 369 CNTPQPSPISQQAAVESNTQMQSTALPRPSVTAEARPLHQPHSN 412


>At1g30490.1 68414.m03727 homeobox-leucine zipper transcription
           factor (HB-9) identical to HD-Zip protein GB:CAA71854
           GI:2145358 from [Arabidopsis thaliana]
          Length = 841

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -2

Query: 177 RTPAANLAQTMPEIYSNRSAGTR-AALPCPNSFCNRIRWRIMVSSDSNRFTTFTLIGF 7
           R   +  A+ M + Y+N  AG   +++  P S+     W+++  ++SN    FTL+ +
Sbjct: 781 RALCSEFAKIMQQGYANLPAGICVSSMGRPVSYEQATVWKVVDDNESNHCLAFTLVSW 838


>At1g18190.1 68414.m02262 expressed protein similar to golgin-84
           {Homo sapiens} (GI:4191344)
          Length = 668

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 598 DASRQATQHVPKRYLPNVGRQRGQFARRS 684
           D+ R A + +P+   P+VG++ G+ +RRS
Sbjct: 232 DSRRSANETLPRETSPSVGKRDGRESRRS 260


>At1g10020.1 68414.m01130 expressed protein
          Length = 461

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 42  NRRRP*YAT*FGCKKSWDKATRPESLPSDSNI 137
           N R+P +   F C+ + D+  R  SLP+++++
Sbjct: 186 NIRQPVFTCKFSCRHTGDRTQRSRSLPTETSV 217


>At1g68490.1 68414.m07824 expressed protein
          Length = 183

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 82  KRVGTRQRGPSPCRAIRIYFRHRL 153
           +R+G R     P R++R YF H+L
Sbjct: 38  RRIGLRNNHHHPSRSLRCYFSHQL 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,730,906
Number of Sequences: 28952
Number of extensions: 294436
Number of successful extensions: 792
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)