Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120689.seq
         (684 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    23   2.3  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   2.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   3.1  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   4.1  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   5.4  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   7.1  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    21   7.1  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    21   7.1  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   7.1  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   9.4  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   9.4  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   9.4  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   9.4  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   9.4  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   9.4  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 532 ASSSNMGRTRAHPFSVGRVCPSSTWSS 452
           A +S      + P ++G+ CP   WSS
Sbjct: 101 APASQQSLDASDPDAMGKWCPRREWSS 127


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 532 ASSSNMGRTRAHPFSVGRVCPSSTWSS 452
           A +S      + P ++G+ CP   WSS
Sbjct: 257 APASQQSLDASDPDAMGKWCPRREWSS 283


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +2

Query: 383  VTLALGALGDGLVRLFEVCLESGRRPSGRWADSSYRERMG 502
            +TL L A  DG   +    +E  ++ S  W   S   ++G
Sbjct: 1507 ITLHLSAWSDGGCPMLYFVIEHKKKTSTEWIQVSNNVKLG 1546


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 316 NMYKCIY*NAYKYVRCQGQIIVCNFGPRCSGG 411
           N ++C   + Y    CQ +I  C+  P  +GG
Sbjct: 166 NSHRCHCSDGYSGSYCQTEINECDSAPCQNGG 197


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = -1

Query: 546 HIIFPPRPATWGEPAPILSL*DESAHLPLGRRPDSRQTSKSRTSPSPRAPRAKV 385
           H  FP R  T   P P   + D   H+ +         +K +   SP A +AKV
Sbjct: 207 HHSFPFRKTTEIPPEPEDYVEDLVGHIEVNHSAPITTCNKKQHLESPSALQAKV 260


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -3

Query: 565 RMTTTRSYNFPASSSNMGRTRAHPFS 488
           RM+  R YN+P         + HP S
Sbjct: 343 RMSRGRQYNYPNPQQQYYYNKNHPNS 368


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 5/25 (20%), Positives = 16/25 (64%)
 Frame = -1

Query: 348 ICVLIYTFIHITGGRTSCESARVGT 274
           +C++IYT + ++    +C++  + +
Sbjct: 281 LCLVIYTLVSVSLVMVTCDACTIAS 305


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 5/25 (20%), Positives = 16/25 (64%)
 Frame = -1

Query: 348 ICVLIYTFIHITGGRTSCESARVGT 274
           +C++IYT + ++    +C++  + +
Sbjct: 281 LCLVIYTLVSVSLVMVTCDACTIAS 305


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -3

Query: 565 RMTTTRSYNFPASSSNMGRTRAHPFS 488
           RM+  R YN+P         + HP S
Sbjct: 291 RMSRGRQYNYPNPQQQYYYNKNHPNS 316


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 434 LQKAALAHPPEHRGP 390
           LQ AAL H  + RGP
Sbjct: 46  LQNAALYHKLQFRGP 60


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = -1

Query: 213 RCDNTEILELYLKVCGAFTL*MSMGSNNHLT 121
           RC  + ++  YL+    F   + + +NN  T
Sbjct: 78  RCIESNMISFYLEATDDFAYFLEVSNNNFKT 108


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 302 PLVSPHG*VPPP 267
           P V PH  VPPP
Sbjct: 12  PTVLPHQEVPPP 23


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 150 MSMGSNNHLTPGG 112
           +S G+NN+ TPGG
Sbjct: 185 VSGGNNNNGTPGG 197


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -1

Query: 453 RPDSRQTSKSRTSPSPRAPRAKVTYD 376
           RPDS  +     + +P   + +V YD
Sbjct: 111 RPDSPSSMHMANTAAPNGHQTQVVYD 136


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 499 HPFSVGRVCPSS 464
           HPFS+ R+ P++
Sbjct: 368 HPFSINRLLPTA 379


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,570
Number of Sequences: 336
Number of extensions: 4422
Number of successful extensions: 18
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)