Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120689.seq
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    31   0.16 
SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.1  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    28   1.4  
SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr...    26   4.4  
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom...    26   4.4  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.7  
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo...    25   7.7  

>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 569 RPALDQHRSRSSCVTVKPQRERLQYRRNHA 658
           +PA++ H S S     KP++E+L Y+  HA
Sbjct: 102 KPAIETHASTSDVANKKPKKEKLPYKVIHA 131


>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 210

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 49  CVNIPTYVFFFDCLRVWTSSQPTW 120
           CVN+P    F+D  R+W ++  T+
Sbjct: 153 CVNLPPETLFYDMQRLWLTAMNTY 176


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 98  GPAHSPPGVKWLLEPIDIYN 157
           GP H P  V WLL P DIY+
Sbjct: 236 GPLHDPNTVMWLLRP-DIYS 254


>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 178

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
 Frame = +2

Query: 569 RPALDQHRSRS-----SCVTVKPQRERLQYRRNH 655
           +P LDQHRSR      +C+      ER  Y RNH
Sbjct: 13  KPKLDQHRSRCHGAYFTCIDCNTTFERTDY-RNH 45


>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 21/80 (26%), Positives = 36/80 (45%)
 Frame = +2

Query: 239 ALLLHAEIGGAVVPTRADSQEVLPPVICINVYIKTHISM*GVRAR*SYVTLALGALGDGL 418
           A + H  +GG+    R    +V P  I +  +     S+ GVR   +         GDG 
Sbjct: 27  AAVTHYGLGGS---GRLYIHDVTPKGIQVCQHYDVEDSLFGVRWSQNCENQVYACCGDGS 83

Query: 419 VRLFEVCLESGRRPSGRWAD 478
           +RLF++ + S  +P  +W +
Sbjct: 84  LRLFDLTMPS--KPIHKWKE 101


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 104 AHSPPGVKWLLEPIDIYNVNAPHTLRYSSKISVLSQRL 217
           A  PP +K    P+DI N++A   L+   KI +L + +
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK---KIDLLLEEI 258


>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
           Prs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 127 VVIGAHRHLQRKCATHLEI*F*DLSIVTTAAPPFKPKRI 243
           +VIG H   Q KC   L+       IV T   P KP+ +
Sbjct: 335 IVIGTHGIFQNKCLKDLQSCEYIEQIVVTNTYPIKPQAV 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,124,976
Number of Sequences: 5004
Number of extensions: 70185
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)