Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120689.seq
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0118 + 817876-818532,818770-818844 31 0.85
03_02_0909 - 12310460-12310759,12310882-12310989,12311099-123112... 25 3.1
09_03_0094 + 12315923-12316237,12316347-12317504 29 3.4
02_02_0241 - 8204430-8205398 29 4.5
12_02_0017 - 12357029-12357070,12357434-12357503,12357722-123578... 28 6.0
12_01_0120 + 912312-912615,913145-913371,913507-913754,914293-91... 28 6.0
09_04_0634 - 19132916-19134033,19134716-19135915,19136002-191361... 28 6.0
08_02_0242 - 14701116-14702666 28 6.0
03_03_0031 + 13922727-13923004,13925052-13925184,13925505-13925666 28 6.0
03_02_0556 + 9448878-9449264 28 6.0
01_06_0229 - 27709786-27710344,27711513-27711642,27712782-277128... 28 6.0
01_01_0357 - 2816650-2817897 28 6.0
>05_01_0118 + 817876-818532,818770-818844
Length = 243
Score = 31.1 bits (67), Expect = 0.85
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 149 IYNVNAPHTLRYSSKISVLSQRLPHPSNRNALLLHAEIGGA 271
+ ++NA + L + +L ++ HP R LLL E GGA
Sbjct: 64 VEHINASYLLPNKDRADLLQPKVLHPDARELLLLQPESGGA 104
>03_02_0909 -
12310460-12310759,12310882-12310989,12311099-12311272,
12311370-12311490,12311569-12311651,12311754-12312420,
12314073-12314440
Length = 606
Score = 24.6 bits (51), Expect(2) = 3.1
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -1
Query: 510 EPAPILSL*DESAHL-PLGRRPDSRQTSKSRTSPSPRAPR 394
+P S+ D HL P GRR R S +P+P+ PR
Sbjct: 15 QPPTPTSVHDSGPHLDPTGRRHIRRAFSIHVGAPTPQRPR 54
Score = 23.0 bits (47), Expect(2) = 3.1
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -1
Query: 414 PSPRAPRAKVTYDYLALTPH 355
P PR PRA LA PH
Sbjct: 77 PEPRIPRAAAIRGPLAARPH 96
>09_03_0094 + 12315923-12316237,12316347-12317504
Length = 490
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 375 YLALTPHILICVLIYTFIHITGGRTSCESARVGTTAP 265
Y A+ +++C LIY+F++ T R +AR AP
Sbjct: 425 YTAIAVPMVLCCLIYSFLYCTYPRDREAAARAEAAAP 461
>02_02_0241 - 8204430-8205398
Length = 322
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 377 SYVTLALGALGDGLVRLFEVCLESGRRP 460
S+ +L A GDG VRLF+V L + P
Sbjct: 76 SHESLCAAASGDGSVRLFDVALPPAQNP 103
>12_02_0017 -
12357029-12357070,12357434-12357503,12357722-12357852,
12358836-12358882,12359762-12360044,12360547-12362413,
12362454-12362665
Length = 883
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/54 (37%), Positives = 22/54 (40%)
Frame = -1
Query: 558 RRLAHIIFPPRPATWGEPAPILSL*DESAHLPLGRRPDSRQTSKSRTSPSPRAP 397
R AH + P P GEPAP S H P S +S S PS R P
Sbjct: 56 RAFAHPLPAPFPNLSGEPAPTPRA--PSRHATPSSSPPSTPSSASAPPPSGRHP 107
>12_01_0120 +
912312-912615,913145-913371,913507-913754,914293-914656,
914758-915154,915671-915693,916645-916987,917513-917532,
918418-918527,919484-920255
Length = 935
Score = 28.3 bits (60), Expect = 6.0
Identities = 8/20 (40%), Positives = 18/20 (90%)
Frame = -1
Query: 375 YLALTPHILICVLIYTFIHI 316
+LAL P I++C+L++++++I
Sbjct: 9 WLALLPPIILCILLFSYVYI 28
>09_04_0634 -
19132916-19134033,19134716-19135915,19136002-19136106,
19136273-19136315,19137622-19137740,19138074-19138172,
19138264-19138480
Length = 966
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/72 (29%), Positives = 29/72 (40%)
Frame = +2
Query: 455 RPSGRWADSSYRERMGAGSPHVAGRGGKII*ASRRHPNRPALDQHRSRSSCVTVKPQRER 634
R G D+ G G V GG+ S + P+L R + V VK ER
Sbjct: 52 REEGEEVDADMERNAGEGLLPVRAGGGE----SEGNAGSPSLGSARGDADLVEVKEIAER 107
Query: 635 LQYRRNHALACS 670
L+ ++ A CS
Sbjct: 108 LKKAKSMAAFCS 119
>08_02_0242 - 14701116-14702666
Length = 516
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = -3
Query: 631 LSLRFYCYAARSGPVLVECRAIRMTTTRSYNFPASSSNMGRTRAHPFSVGRVCPSSTWSS 452
+SL +S P + E R T S++ P S R S+GR SS+ SS
Sbjct: 360 ISLSAMAKLLQSCPAVSELRLRLTTKDDSHSHPVSEEQRFNRRISGNSIGRRIESSSSSS 419
Query: 451 SRLKADFK 428
S+ + D +
Sbjct: 420 SKDEGDLE 427
>03_03_0031 + 13922727-13923004,13925052-13925184,13925505-13925666
Length = 190
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 456 RRPDSRQTSKSRTSPSPRAPRAKVTYDYLALTPH 355
R P + Q S++ P PRAPR T Y+A H
Sbjct: 28 RLPMAEQVSRALDIPLPRAPRRLETVRYIAEYEH 61
>03_02_0556 + 9448878-9449264
Length = 128
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 413 GLVRLFEVCLESGRRPSGRWADSSYRERMGAGSPHVAGRGGK 538
G V L+ C RR RW ++ ++R+GAG P + R G+
Sbjct: 85 GRVPLWLPCSRGLRR---RWGGAAAQQRLGAGVPGMGARDGE 123
>01_06_0229 -
27709786-27710344,27711513-27711642,27712782-27712869,
27714070-27714363
Length = 356
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 465 EDGQTRPTEKGWARVRPMLLDEAGKLYE 548
EDGQ E+ WAR+ P L+ E + E
Sbjct: 23 EDGQAEDQEERWARLLPELMSEVVRRVE 50
>01_01_0357 - 2816650-2817897
Length = 415
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/44 (43%), Positives = 20/44 (45%)
Frame = +2
Query: 467 RWADSSYRERMGAGSPHVAGRGGKII*ASRRHPNRPALDQHRSR 598
R A R R GSP + G II RR P R AL HR R
Sbjct: 190 RHAQQLGRARRVPGSPPLLPGGRGIIVIRRRPPRRGALAVHRPR 233
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,929,778
Number of Sequences: 37544
Number of extensions: 543898
Number of successful extensions: 1544
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1544
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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