Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120689.seq
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)                 31   1.1  
SB_46042| Best HMM Match : Extensin_2 (HMM E-Value=0.39)               30   2.0  
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_59055| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.55)          28   6.1  
SB_43856| Best HMM Match : Laminin_I (HMM E-Value=0.057)               28   6.1  
SB_35264| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_10723| Best HMM Match : Chromo (HMM E-Value=0.031)                  28   6.1  
SB_9047| Best HMM Match : RVT_1 (HMM E-Value=3.4e-19)                  28   6.1  
SB_55324| Best HMM Match : zf-CCHC (HMM E-Value=0.00014)               28   8.1  
SB_24456| Best HMM Match : Lipase_chap (HMM E-Value=1.3)               28   8.1  
SB_23899| Best HMM Match : TNFR_c6 (HMM E-Value=7.1e-09)               28   8.1  
SB_22713| Best HMM Match : DUF552 (HMM E-Value=0.91)                   28   8.1  
SB_19049| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)            28   8.1  
SB_38828| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024)              28   8.1  

>SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2653

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 390  WPSVLWGMG*CGFLKSALSRDDDQVEDGQTRPTEK 494
            WPS    +G  GFLK  +  D D++ D   R  +K
Sbjct: 1258 WPSAKTMLGDAGFLKKLMDYDKDKIPDSTLRKLKK 1292


>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
          Length = 839

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 553 TRSYNFPASSSNMGRTRAHPFSVGRVCPSSTWSSS 449
           T  Y+FP+ S        HP +  R+   S WSSS
Sbjct: 293 TTPYSFPSGSKKRNSKSPHPSAPNRLADPSQWSSS 327


>SB_46042| Best HMM Match : Extensin_2 (HMM E-Value=0.39)
          Length = 418

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +2

Query: 41  YLCV*IYLRMYFFLIVYVCGPAHSPPGVKWL-LEPIDIYNVNAPHTLRYSSKISVLSQRL 217
           Y+ V +Y+ +Y ++ VYV G A      KW+  +P+  Y    P    Y+      S+++
Sbjct: 276 YVYVYVYVYVYVYVYVYVYGSASIDRVRKWVGSQPVGGYTQTPPPPTTYAH----FSEQI 331

Query: 218 PHPSNRNALL 247
           P+  +++ LL
Sbjct: 332 PNRIHQSDLL 341


>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +3

Query: 210 NGCPTLQTETHYCFTQK*AGRWYLPVRTHKRSYH 311
           N C   +T+ + C   K    WY P +T    YH
Sbjct: 445 NWCHPTKTQANLCHPTKTQANWYHPSKTQANWYH 478


>SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 898

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 513 PMLLDEAGKLYERVVVIRIALHSTNTGPDLAA 608
           P + +E GK   R  ++RI     NTG D+ A
Sbjct: 219 PFVCEEGGKWVLRGALVRIGTKDANTGKDIVA 250


>SB_59055| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.55)
          Length = 330

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 471 HLPLGRRPDSRQTSKSRTSPSPRAPR 394
           H P   R +SR  S  +TSP P++P+
Sbjct: 3   HRPTSPRKESRPPSPRKTSPRPQSPK 28


>SB_43856| Best HMM Match : Laminin_I (HMM E-Value=0.057)
          Length = 976

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 471 HLPLGRRPDSRQTSKSRTSPSPRAPR 394
           H P   R +SR  S  +TSP P++P+
Sbjct: 441 HRPTSPRKESRPPSPRKTSPRPQSPK 466


>SB_35264| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 554 RRHPNRPALDQHRSRSSCVTVKPQRERLQYRRNHA 658
           R+  N+  L + RSR    T   +R R QY+R H+
Sbjct: 114 RKPDNQRGLKRSRSRKDDTTANAKRNRSQYQRLHS 148


>SB_10723| Best HMM Match : Chromo (HMM E-Value=0.031)
          Length = 191

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
 Frame = +1

Query: 463 WKMGRLVLQRK--DGRGFAP--CCWTRREN 540
           W++ RLVL+RK  +G+GF+P    W   EN
Sbjct: 37  WEVDRLVLERKTTEGKGFSPYDATWEPVEN 66


>SB_9047| Best HMM Match : RVT_1 (HMM E-Value=3.4e-19)
          Length = 1116

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 461 LVVVPTQGRLQKAALAHPPEHRGPKLH 381
           LV+VP QG + +  +   P+  GPK H
Sbjct: 135 LVLVPDQGGVNQLRVQQKPDSAGPKFH 161


>SB_55324| Best HMM Match : zf-CCHC (HMM E-Value=0.00014)
          Length = 344

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -1

Query: 528 RPAT-WGEPAPILSL*DESAHLPLGRRPDSRQTSKSRTSPSPRAP 397
           RP + W +PA +  +  E   + L   P  R+   +R  P P AP
Sbjct: 107 RPTSQWSDPAGVFKILREVFGVGLTIHPSDREADGARVRPCPDAP 151


>SB_24456| Best HMM Match : Lipase_chap (HMM E-Value=1.3)
          Length = 456

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 134 LEPIDIYNVNAPHTLRYSSKISVLSQRLPHPSNRNALLLHAEIGGAVVPTRADSQ 298
           +EP+   N     + R  SK +V + R+P PS   A    A++ G+ +  R  +Q
Sbjct: 1   MEPVQEGNPAKSASFRKLSKTAVEADRVPKPSQSTAKASDAKVTGSKMKNRDMAQ 55


>SB_23899| Best HMM Match : TNFR_c6 (HMM E-Value=7.1e-09)
          Length = 533

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 289 GLTRGPTTSNMYKCIY*NAYKYVRCQGQIIVCNFGPRCSGGWASA 423
           G T G T     +C Y N  ++V+  G+I+ C   P+C+ G  S+
Sbjct: 72  GATPGKTPRAAMRCKY-NQIEWVK-HGKIVACQACPQCTPGEESS 114


>SB_22713| Best HMM Match : DUF552 (HMM E-Value=0.91)
          Length = 237

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 631 LSLRFYCYAARSGPVLVECRAIRMTTTRSYNFPASS 524
           +S RF C  A SG V +EC     TTT     P ++
Sbjct: 98  ISARFGCLDAMSGTVTLECDTAIFTTTCEARAPQNT 133


>SB_19049| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1051

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 474 AHLPLGRRPDSRQTSKSRTSPSPRAPRAKVTYDYLA 367
           A  P+G  PD + T KS+ +P P  P  K   D +A
Sbjct: 776 AFFPMGTSPDLQATHKSQ-APLPMGPHRKYLLDAVA 810


>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
          Length = 677

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 210 NGCPTLQTETHYCFTQK*AGRWYLPVRT 293
           N C   +T+ ++C T K    WY P +T
Sbjct: 190 NWCHPYKTQANWCHTSKIQSNWYHPNKT 217


>SB_38828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
 Frame = +2

Query: 119 GVKWLLEPIDIYNVNAP--HTLRYSSK-ISVLSQRLPHPSNRNALLLHAEIGGAVVPTRA 289
           G+ W+++ ID++ V+ P   T++YS + ++ LS R   P +R  L+    +G    P  A
Sbjct: 4   GILWVVQSIDLWLVSRPTEGTMKYSDRHLAGLSAR---PPDRVELIGAGSLGYGPAPASA 60

Query: 290 D 292
           +
Sbjct: 61  E 61


>SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024)
          Length = 180

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 210 NGCPTLQTETHYCFTQK*AGRWYLPVRT 293
           N C   +T+ ++C T K    WY P +T
Sbjct: 35  NWCHPYKTQANWCHTSKIQSNWYHPNKT 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,702,765
Number of Sequences: 59808
Number of extensions: 607417
Number of successful extensions: 1837
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1834
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)