Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120689.seq
         (684 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC013376-1|AAH13376.1|  401|Homo sapiens MARVEL domain containin...    31   2.9  
BC011893-1|AAH11893.1|  401|Homo sapiens MARVEL domain containin...    31   2.9  
AK131343-1|BAD18499.1|  133|Homo sapiens protein ( Homo sapiens ...    31   5.0  
AF338650-1|AAK07661.1| 2641|Homo sapiens PDZ domain-containing p...    31   5.0  
AB002298-1|BAA20760.2| 2847|Homo sapiens KIAA0300 protein.             31   5.0  
BC009518-1|AAH09518.1|  821|Homo sapiens coiled-coil domain cont...    30   6.7  
AK057326-1|BAB71428.1|  607|Homo sapiens protein ( Homo sapiens ...    30   6.7  

>BC013376-1|AAH13376.1|  401|Homo sapiens MARVEL domain containing 3
           protein.
          Length = 401

 Score = 31.5 bits (68), Expect = 2.9
 Identities = 25/85 (29%), Positives = 36/85 (42%)
 Frame = -1

Query: 534 PPRPATWGEPAPILSL*DESAHLPLGRRPDSRQTSKSRTSPSPRAPRAKVTYDYLALTPH 355
           PP PA W  P P      +    P  RRP+S   S+     +PR  R +V Y Y +    
Sbjct: 129 PPGPAPWEAPEPPQP---QRKGDPGRRRPESEPPSERYLPSTPRPGREEVEY-YQSEAEG 184

Query: 354 ILICVLIYTFIHITGGRTSCESARV 280
           +L C   +   ++  GR  C+   V
Sbjct: 185 LLEC---HKCKYLCTGRACCQMLEV 206


>BC011893-1|AAH11893.1|  401|Homo sapiens MARVEL domain containing 3
           protein.
          Length = 401

 Score = 31.5 bits (68), Expect = 2.9
 Identities = 25/85 (29%), Positives = 36/85 (42%)
 Frame = -1

Query: 534 PPRPATWGEPAPILSL*DESAHLPLGRRPDSRQTSKSRTSPSPRAPRAKVTYDYLALTPH 355
           PP PA W  P P      +    P  RRP+S   S+     +PR  R +V Y Y +    
Sbjct: 129 PPGPAPWEAPEPPQP---QRKGDPGRRRPESEPPSERYLPSTPRPGREEVEY-YQSEAEG 184

Query: 354 ILICVLIYTFIHITGGRTSCESARV 280
           +L C   +   ++  GR  C+   V
Sbjct: 185 LLEC---HKCKYLCTGRACCQMLEV 206


>AK131343-1|BAD18499.1|  133|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16361 fis, clone THYMU2030462. ).
          Length = 133

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
 Frame = -1

Query: 414 PSPRAPRA------KVTYDYLALTPHILICVLIYTFIHI 316
           P  R+PRA      K+   +LAL  H+ +C+ IYT I+I
Sbjct: 3   PLARSPRASIVALRKMITSFLALWWHVCVCICIYTHIYI 41


>AF338650-1|AAK07661.1| 2641|Homo sapiens PDZ domain-containing
            protein AIPC protein.
          Length = 2641

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
 Frame = -1

Query: 546  HIIFPPRPA--TWGEPAPILSL*DESAHLP--LGRRPDSRQTSKSRTSPSPRAPR 394
            H+ F PRPA  T+  PA   S      H P  LGR  DS+    S   P  +A R
Sbjct: 2013 HLYFTPRPATRTYSMPAQFSSHFGREGHPPHSLGRSRDSQVPVTSSVVPEAKASR 2067


>AB002298-1|BAA20760.2| 2847|Homo sapiens KIAA0300 protein.
          Length = 2847

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
 Frame = -1

Query: 546  HIIFPPRPA--TWGEPAPILSL*DESAHLP--LGRRPDSRQTSKSRTSPSPRAPR 394
            H+ F PRPA  T+  PA   S      H P  LGR  DS+    S   P  +A R
Sbjct: 2219 HLYFTPRPATRTYSMPAQFSSHFGREGHPPHSLGRSRDSQVPVTSSVVPEAKASR 2273


>BC009518-1|AAH09518.1|  821|Homo sapiens coiled-coil domain
           containing 45 protein.
          Length = 821

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 465 PLGRRPDSRQTSKSRTSPSPRAPRAKVT 382
           P G+R ++R T+ S  SP P+ PR ++T
Sbjct: 337 PKGKRNENRATASSCNSPFPQRPRKRLT 364


>AK057326-1|BAB71428.1|  607|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32764 fis, clone TESTI2001829. ).
          Length = 607

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 465 PLGRRPDSRQTSKSRTSPSPRAPRAKVT 382
           P G+R ++R T+ S  SP P+ PR ++T
Sbjct: 337 PKGKRNENRATASSCNSPFPQRPRKRLT 364


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,683,574
Number of Sequences: 237096
Number of extensions: 2884876
Number of successful extensions: 7172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7161
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)