Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120689.seq
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.1  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   2.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.7  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   6.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   6.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.3  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   8.3  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 413 HPPEHRGPKLHTII 372
           HPPE  GP++ TI+
Sbjct: 468 HPPETPGPQVETIL 481


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 577 TRPTQVPI*LRNSKTSERATPISTQSCACVF 669
           T   + P+ LRN     ++ P+   SC C++
Sbjct: 157 TIKAKCPMELRNFPMDRQSCPLILGSCKCIY 187


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 375 YLALTPHILICVLIYT 328
           +L++  +IL+CV IYT
Sbjct: 37  FLSVAGNILVCVAIYT 52


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 493 KDGRGFAPCCW 525
           +D  G+ PCCW
Sbjct: 480 RDMIGYYPCCW 490


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 493 KDGRGFAPCCW 525
           +D  G+ PCCW
Sbjct: 533 RDMIGYYPCCW 543


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 644 DIGVALSEVLLLRS*IGTCV 585
           D G  ++EV++L S +GT V
Sbjct: 740 DFGFCITEVMMLGSIVGTPV 759


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 644 DIGVALSEVLLLRS*IGTCV 585
           D G  ++EV++L S +GT V
Sbjct: 778 DFGFCITEVMMLGSIVGTPV 797


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = +2

Query: 509 SPHVAGRGGKII*ASRRHPNRPALDQHRSRSSCVTVKPQRERLQYRR 649
           SP +   GG+ I   + H +   +D    +   +  KP  E  +Y++
Sbjct: 144 SPQMYSSGGEEITPRQSHQSYHHMDSVEYKPEIMEYKPDVEEQRYKQ 190


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 413  GLVRLFEVCLESGRRPSGRWADSSYRERMGAGSP 514
            GLV   +    SG   SG  A+S  +++  +G P
Sbjct: 1555 GLVVQLQRGYNSGNNRSGEQANSQQQQQQQSGEP 1588


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 286 CGLTRGPTTSNMY 324
           CG+   P T+N+Y
Sbjct: 252 CGMALSPVTNNLY 264


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,832
Number of Sequences: 438
Number of extensions: 5637
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)