Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120689.seq
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein si...    35   0.058
At2g14070.1 68415.m01565 wound-responsive protein-related simial...    31   0.71 
At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family...    29   2.9  
At5g28510.1 68418.m03470 glycosyl hydrolase family 1 protein con...    28   5.0  
At5g24460.1 68418.m02883 expressed protein                             28   5.0  
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,...    28   5.0  
At3g46800.1 68416.m05080 DC1 domain-containing protein contains ...    28   5.0  
At5g45520.1 68418.m05591 hypothetical protein                          28   6.6  
At3g58050.1 68416.m06471 expressed protein                             28   6.6  
At2g32000.1 68415.m03910 DNA topoisomerase family protein simila...    27   8.8  

>At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein
           similar to alpha-glucosidase II from SP:Q9F234 [Bacillus
           thermoamyloliquefaciens]; contains Pfam profile: PF01055
           Glycosyl hydrolases family 31
          Length = 991

 Score = 34.7 bits (76), Expect = 0.058
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = +2

Query: 107 HSPPGVKWLLEPIDIYNVNAPHTLRYSS-----KISVLSQRLPHPSNRNALLLHAEIGGA 271
           H P G++WL   IDI          Y S     + +V+ + L H     +L+L  ++GG 
Sbjct: 783 HVPSGIQWLHSRIDINGYEEYSGTEYRSAGCTEEYNVIERDLEHAGEEESLILEGDVGGG 842

Query: 272 VVPTR 286
           +V  R
Sbjct: 843 LVLRR 847


>At2g14070.1 68415.m01565 wound-responsive protein-related simialr
           to wound induced protein [Lycopersicon esculentum]
           GI:19320
          Length = 196

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
 Frame = -3

Query: 649 ASILESLSLRFYCYAARSGPVLVECRAIRMTTTRSYNFPASSSNMG-RTRAHPFSVGRVC 473
           A +L SL++     + R    +V   AI    TR +N+P    N   R R    +V    
Sbjct: 95  ALVLTSLAVMSAAASTRHTSWMV-ATAIAAVETR-WNYPLRFFNKDVRARLRAIAVTSRP 152

Query: 472 PSSTWSSSRLKADFKKPH*PIPQS 401
           PSS  SSS   AD  K + P+P+S
Sbjct: 153 PSSASSSSSSSADLVKENHPMPKS 176


>At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family
           protein (ROS1) similar to DEMETER protein [Arabidopsis
           thaliana] GI:21743571; contains Pfam profile PF00730:
           HhH-GPD superfamily base excision DNA repair protein
          Length = 1393

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 453 RPDSRQTSKSRTSPSPRAPRAKVTYD 376
           RP  R+ +K +  P PRAPR  V  D
Sbjct: 123 RPKVRREAKPKREPKPRAPRKSVVTD 148


>At5g28510.1 68418.m03470 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to beta-glucosidase 1 (GI:12043529) [Arabidopsis
           thaliana]
          Length = 533

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -2

Query: 326 LYILLVVGPLVSPHG*VPPPR 264
           L++L++VGPLV+  G V PP+
Sbjct: 14  LWLLIIVGPLVNADGPVCPPK 34


>At5g24460.1 68418.m02883 expressed protein
          Length = 300

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -1

Query: 516 WGEPAPILSL*DESAHLPLGRRPDSRQTSKSRTSPSPRAP 397
           W  P P++SL       PL  R  S  T+ SR SP P  P
Sbjct: 46  WSSPKPLVSLPPNRFSFPLNPRRRS-ITAMSRRSPPPPPP 84


>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
           putative strong similarity to SP|P83483 ATP synthase
           beta chain 1, mitochondrial precursor (EC 3.6.3.14)
           {Arabidopsis thaliana}, SP|P17614 ATP synthase beta
           chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
           plumbaginifolia}; contains Pfam profiles PF00006: ATP
           synthase alpha/beta family nucleotide-binding domain,
           PF00306: ATP synthase ab C terminal, PF02874: ATP
           synthase alpha/beta family beta-barrel domain
          Length = 559

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
 Frame = +2

Query: 98  GPAHSPPGVKWLLEPIDIYNVNAPHTLRYSSKISVLSQ--RLPHPSNRNALLLHAEIGGA 271
           GPAH       LL  +  Y+ ++P      S      +  +      + A+    ++ GA
Sbjct: 36  GPAHGAAPCGTLLGRVAEYSTSSPANSAAPSSAPAKDEGKKTYDYGGKGAIGRVCQVIGA 95

Query: 272 VVPTRADSQEVLPPVI 319
           +V  R + QE LPP++
Sbjct: 96  IVDVRFEDQEGLPPIM 111


>At3g46800.1 68416.m05080 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 682

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 492 SL*DESAHLPLGRRPDSRQTSKSRTSPSPRA-PRAKVTYDYLALTPHI 352
           S+ D + HL   RRP S  +S S +SP P +   +KV    L L+ ++
Sbjct: 94  SICDFNVHLVCARRPPSSTSSSSSSSPLPTSVDNSKVHQHPLLLSKNV 141


>At5g45520.1 68418.m05591 hypothetical protein
          Length = 1167

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +3

Query: 429 LKSALSRDDDQVED-GQTRPTEKG 497
           LK  + R+DDQV++ GQT   EKG
Sbjct: 579 LKDLMEREDDQVQNYGQTSKEEKG 602


>At3g58050.1 68416.m06471 expressed protein
          Length = 1209

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 189 LRSQYCHNGCPTLQTETHYC 248
           ++ + C +GCP+ + E HYC
Sbjct: 627 VQERQCLDGCPSPRAENHYC 646


>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
           to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
           {Mus musculus}
          Length = 865

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = +3

Query: 480 RPTEKGWARVRPMLLDEAGKLY-----ERVVVIRIALHSTNTGP 596
           R TEKG+  + P    +  KL      ER+ V+R+ L+  NT P
Sbjct: 441 RVTEKGFTAIMPWSAVDEKKLPSFLKGERIEVLRVELYEGNTAP 484


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,766,954
Number of Sequences: 28952
Number of extensions: 395213
Number of successful extensions: 929
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)