Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120681.seq
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    27   2.6  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   3.4  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    26   5.9  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    25   7.8  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   7.8  

>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +1

Query: 229 NSDNSTVVNFSNKQIN 276
           N+DNS + NFSN+Q+N
Sbjct: 55  NNDNSKIDNFSNEQMN 70


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -1

Query: 673 GERTHSPSGVKWLLEPIDIYN---VNAQLNLRYKL 578
           G   H P+ V WLL P DIY+   VN Q+  + +L
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYSGRKVNVQIETQSEL 268


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 21/82 (25%), Positives = 35/82 (42%)
 Frame = -1

Query: 688 EKKKIGERTHSPSGVKWLLEPIDIYNVNAQLNLRYKLYIRSQLQQLPHPSNRNALLLHGR 509
           E KK G + H+ S  K  L    I+++N            ++   +  P N +  ++   
Sbjct: 326 ETKKSGNKDHATSSEKLSLGNESIHSIN-----------ETRSSSIEEPDNADNKIVEEE 374

Query: 508 IVRVVVPTRADSQVVLPPVKND 443
            + + VPT A  Q VL  V+ D
Sbjct: 375 PMLLPVPTTAQGQNVLEAVQYD 396


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +1

Query: 277  NQRNVDNYYQHHACEYYWNLVVTLYSVLFNTLNAMMDTKYSRHTYH*SRTHRC-IKNHFL 453
            N   + NY + HA   +  +V++L + LF+   A++   Y     + SRT    ++++F 
Sbjct: 1170 NVTKIANYIRQHASSGFQFVVISLKNQLFSKSEALVGI-YRDQQENSSRTLSINVRDYFF 1228

Query: 454  LVV 462
            L++
Sbjct: 1229 LIL 1231


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 448 FLLVVGPLVSPRGWVP 495
           FLLV+ PL  PR W P
Sbjct: 166 FLLVIIPLFFPRAWSP 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,610
Number of Sequences: 5004
Number of extensions: 55044
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)