Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120681.seq
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0755 - 6343084-6345172,6345526-6346367                           28   6.1  
04_04_0016 - 22167780-22167873,22167978-22168272,22168380-221684...    28   6.1  

>11_01_0755 - 6343084-6345172,6345526-6346367
          Length = 976

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = -2

Query: 267 FVTEVYYCGIIAVCSATTNIYEQFLNRLVTKMH--PRKCIQ*RSR*FFFSQ*NVYESKQL 94
           F+T +  CG+  +C ++TN+ ++ L+ + T  H    K ++   + F     +    + L
Sbjct: 784 FITSL--CGLTELCLSSTNLNKEDLSNVCTLHHLLYLKLVESDLQGFIIKNGDFPRMRHL 841

Query: 93  CIIV*KNNLRVV 58
           C++V   NL  V
Sbjct: 842 CLVVQNPNLPTV 853


>04_04_0016 -
           22167780-22167873,22167978-22168272,22168380-22168455,
           22168665-22168853,22168955-22169176,22169315-22169413,
           22169502-22169582,22169753-22170060,22171611-22171950,
           22172047-22172110,22172191-22172412,22172865-22173043
          Length = 722

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -2

Query: 303 VIIIDIPLIVNLFVTEVYYCGIIAVCSATTNIYEQFLNRLVTKMH 169
           VI+ DIP+ V   +++  Y  +++         + FL+++V K+H
Sbjct: 359 VIVDDIPVAVRSKMSQTLYLDMVSRVGLFRGCSDDFLSQIVLKLH 403


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,701,819
Number of Sequences: 37544
Number of extensions: 329360
Number of successful extensions: 694
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)