Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120681.seq
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)               31   0.67 
SB_27550| Best HMM Match : Fe_hyd_lg_C (HMM E-Value=3.6e-05)           29   3.6  
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)            29   4.7  
SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024)              29   4.7  

>SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)
          Length = 1631

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = -1

Query: 544 PSNRNALLL--HGRIVRVVVPTRADSQVVL---PPVKNDS*YIGACGSSDKYVVNT 392
           P+N N LLL  HG + +   P ++D Q V          +  I  CGS++ Y +NT
Sbjct: 321 PANSNVLLLDKHGNLKKKFKPIKSDKQPVTFSGVAFTKSNELIAVCGSTEVYYLNT 376


>SB_27550| Best HMM Match : Fe_hyd_lg_C (HMM E-Value=3.6e-05)
          Length = 136

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = +2

Query: 77  FYTIIHNCFDSYTFYCEKKNYLDLYCMHFLGCIFVTNRFKNCSYIFVV 220
           ++  +  CFD          Y D+Y    + C+  T   + C Y+ VV
Sbjct: 48  YHVCVMPCFDKKLEASRDDFYNDMYSTRDVDCVISTGGTRQCRYVHVV 95


>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
          Length = 677

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -2

Query: 588 DISYISGLSYNSCPTLQTETHYCFTAE*SGWWYPPARTH-KWSY 460
           +++  S    N C   +T+ ++C T++    WY P +T   W Y
Sbjct: 180 NLNQASKTQANWCHPYKTQANWCHTSKIQSNWYHPNKTQTNWCY 223


>SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024)
          Length = 180

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -2

Query: 588 DISYISGLSYNSCPTLQTETHYCFTAE*SGWWYPPARTH-KWSY 460
           +++  S    N C   +T+ ++C T++    WY P +T   W Y
Sbjct: 25  NLNQASKTQANWCHPYKTQANWCHTSKIQSNWYHPNKTQTNWCY 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,865,934
Number of Sequences: 59808
Number of extensions: 406125
Number of successful extensions: 895
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)