Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120681.seq
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82084-3|CAB04977.1|  780|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z81081-2|CAB03091.2|  451|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z83318-5|CAE54897.1|  203|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AC006830-5|AAK68612.2|  569|Caenorhabditis elegans Hypothetical ...    28   7.2  
Z83318-3|CAB05903.3|  231|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical p...    27   9.6  
Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z82084-3|CAB04977.1|  780|Caenorhabditis elegans Hypothetical
           protein ZK1053.3 protein.
          Length = 780

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 71  LFFYTIIHNCFDSYTFYCEKKNYLDLYCMHFLGCIFVTNRFKN 199
           L  Y  ++   + Y F  E K + ++YC     CI VT R KN
Sbjct: 471 LLMYNRVNGRLEQYVFSFETKGFKEVYC----SCIEVTYRGKN 509


>Z81081-2|CAB03091.2|  451|Caenorhabditis elegans Hypothetical
           protein F42D1.3 protein.
          Length = 451

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -2

Query: 318 TCVMLVIIIDIPLIVNLFVTEVYYCGIIAVCSATT 214
           T +MLV I+ I LIVNL   +  + G++ VC   T
Sbjct: 300 TSLMLVAIVSIFLIVNL--PQAIFMGLLCVCETFT 332


>Z83318-5|CAE54897.1|  203|Caenorhabditis elegans Hypothetical
           protein F55B11.5 protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = -1

Query: 238 YRCLLGDYKYI*TIFKSISYKNASKEMHXXXXXXXXXXXXXXIRIKTIVYNC 83
           + CLL  Y+YI ++F  + YK+ S                  +++K I Y C
Sbjct: 14  FMCLLLHYRYIRSVFPVLEYKSLSDYKLVSHQLARFQFVMDCLKLKNIEYTC 65


>AC006830-5|AAK68612.2|  569|Caenorhabditis elegans Hypothetical
           protein ZK105.5 protein.
          Length = 569

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -2

Query: 291 DIPLIVNLFVTEVYYCGIIAVCSATTNIYEQFLNRLVTKM 172
           DI +++N+F  ++Y   + +    T N++ +FL  L+  M
Sbjct: 277 DIEVLINMFTEDMYCTKVSSTLIFTMNLFREFLIVLLFNM 316


>Z83318-3|CAB05903.3|  231|Caenorhabditis elegans Hypothetical
           protein F55B11.3 protein.
          Length = 231

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = -1

Query: 238 YRCLLGDYKYI*TIFKSISYKNASKEMHXXXXXXXXXXXXXXIRIKTIVYNC 83
           + CLL  Y+YI ++F  + YK+ S                  ++++T  Y C
Sbjct: 42  FMCLLPHYRYIESVFPVLEYKSLSDYKLVSLQLAHLQFVVDCLKLETTEYTC 93


>Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 276 VNLFVTEVYYCGIIAVCSATTNIYEQFLNRLVTKMHPRK 160
           +NLF T+ +Y GI+ V +A     + F   ++    PRK
Sbjct: 6   INLFATDEFYAGILHVPTAIEVTVQLFGAYIILTKTPRK 44


>Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 276 VNLFVTEVYYCGIIAVCSATTNIYEQFLNRLVTKMHPRK 160
           +NLF T+ +Y GI+ V +A     + F   ++    PRK
Sbjct: 6   INLFATDEFYAGILHVPTAIEVTVQLFGAYIILTKTPRK 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,057,292
Number of Sequences: 27780
Number of extensions: 311911
Number of successful extensions: 859
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)