Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120680.seq
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    36   0.004
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    30   0.36 
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    29   0.64 
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    28   1.5  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    27   3.4  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    26   4.5  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    26   4.5  
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.9  
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb...    26   5.9  
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||...    26   5.9  
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.9  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    26   5.9  

>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +3

Query: 504 SNEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRXNELDAKLN 683
           +NEGE DD+   +ES  + +++   +S+K +   E  +ND   R    E + + L A L 
Sbjct: 371 NNEGELDDILTTLESDREQLRRHEEHSQKLLKFIEEIRNDYEERIHALESQNSALKAHLR 430

Query: 684 M 686
           +
Sbjct: 431 L 431


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +3

Query: 510 EGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRXNELDAKLNML 689
           EG++ DL  KI  + K   KLNT     ++T +     +    ++ E R   L+ +LNML
Sbjct: 514 EGKKADLTSKINRLDKDFVKLNTTYS--LLTDQVKTKQLA--LQEIESRVIRLEERLNML 569

Query: 690 Q 692
           Q
Sbjct: 570 Q 570


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +1

Query: 190 VAHR*MGFIXMQHAQFQVQIRANDTNAKFYNVIDFCKGLEIAHDD-ILDCNWDSDQVYHL 366
           +A + +  I  +   +    RANDT+  F N        +I+HD+ ++    D    ++L
Sbjct: 558 LASKSINLIQKKSTMYDTNARANDTDVDFSNDKQNTHDFQISHDENLIQLFNDESNFFNL 617

Query: 367 NEI 375
           N++
Sbjct: 618 NDL 620


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 370 EIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSN 489
           ++ FH Q+ KRD+ +L  ++ T    L  L+   F + +N
Sbjct: 79  QLEFHAQEGKRDVTNLTCVYGTSPQQLDRLITREFSSDAN 118


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 319 RAQFQDLCKNLLHCRIL 269
           RA+F +LC N+LH R L
Sbjct: 396 RAKFNNLCSNILHFRAL 412


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 208 GFIXMQHAQFQVQ-IRANDTNAKFYNVIDFCKGLEIAHDDILDC 336
           G++  Q   F +Q  R+N ++ +   V + C   E   D ILDC
Sbjct: 121 GYLARQAHNFLLQCFRSNVSSLRGQKVHEHCSSTEKGDDAILDC 164


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 546 SVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRXNELDA 674
           + L H+  L   +      H TFK++V N    +EL  +EL A
Sbjct: 350 AALNHISALEKETISHTDLHHTFKHEV-NSSNNYELTNDELAA 391


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = +3

Query: 522 DDLRDKIESVLKHVKKLNTNSEKFMVTHETFK-----NDVGNRFEQFELRXNELDAKLNM 686
           D+  + ++ ++K  KKL  ++E+    H T K     N +G  F + ++    +D KL++
Sbjct: 208 DENGEILKRLVKKEKKLKNDNERLENEHRTEKLNVNANSLGKSFVKHDIPLPPVDLKLDI 267

Query: 687 LQ 692
            +
Sbjct: 268 FE 269


>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 323

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/63 (19%), Positives = 29/63 (46%)
 Frame = +3

Query: 504 SNEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRXNELDAKLN 683
           S +GE  +++ ++  + +   +LNT  +      E     +  RF   + R N +D + +
Sbjct: 146 SMKGEMAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRFNSIDRRFD 205

Query: 684 MLQ 692
            ++
Sbjct: 206 SME 208


>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/63 (19%), Positives = 29/63 (46%)
 Frame = +3

Query: 504 SNEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRXNELDAKLN 683
           S +GE  +++ ++  + +   +LNT  +      E     +  RF   + R N +D + +
Sbjct: 146 SMKGEMAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRFNSIDRRFD 205

Query: 684 MLQ 692
            ++
Sbjct: 206 SME 208


>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 215

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = -2

Query: 430 RTMRPTS*DRVWISACEK*FRLN--GKLDR---CPNCNQVCRRAQFQDLCKNL 287
           RT +P   D +W +AC++   +N   K  R    P C Q+C  +Q  D   NL
Sbjct: 81  RTCQPKQHDSIWCTACQQTKGINEFSKAQRHVLDPRC-QICVHSQRNDGDDNL 132


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 570 LNTNSEKFMVTHETFKNDVGNRFEQFELRXNELD-AKLNML 689
           L  NSEKF    E+ K+ V N  +      NE+D  + N+L
Sbjct: 360 LKENSEKFKQNSESLKSRVDNLNDYITKLQNEIDECRRNLL 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,759
Number of Sequences: 5004
Number of extensions: 44774
Number of successful extensions: 160
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)