Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120680.seq
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0686 + 18701543-18701917,18702658-18702702,18703175-187032... 35 0.070
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702... 31 1.1
02_01_0647 + 4826411-4827343,4827437-4828060 31 1.1
11_02_0123 - 8550193-8550213,8550434-8550682,8550787-8550834,855... 29 2.6
04_03_0621 - 18102243-18104249 29 2.6
01_06_1034 + 33962813-33963802 29 3.5
03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512 29 4.6
04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879 28 6.1
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 28 8.1
>04_03_0686 +
18701543-18701917,18702658-18702702,18703175-18703289,
18703644-18703713,18703796-18703844,18704319-18704416,
18704984-18705122,18705261-18705410
Length = 346
Score = 34.7 bits (76), Expect = 0.070
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 229 AQFQVQIRANDTNAKFYNVIDFCKGLE-IAHDDILDCNWD 345
+ F V A+FYNV C +E IAHD +LDC+WD
Sbjct: 293 SDFIVDAEGLSETARFYNVQPVC--IEGIAHDMMLDCSWD 330
>10_08_0961 +
21869612-21869773,21869869-21869956,21870047-21870277,
21870371-21870538,21870808-21871001,21871151-21871234,
21871315-21871434,21871621-21871714,21871813-21871973,
21873237-21873313,21873738-21873932,21874487-21874559,
21874635-21874721,21874906-21875043,21875181-21875383,
21875469-21875631,21875861-21875992
Length = 789
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = +3
Query: 510 EGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRXNELDAKLNML 689
E D L++ ++++ + V +N EK++ E FKN+ + + EL+ + L
Sbjct: 167 ENHNDYLKEVVDNLRQAVSIINRKHEKYLDEIEAFKNNQSRELHEVKCLSGELEESMAEL 226
Query: 690 Q 692
+
Sbjct: 227 E 227
>02_01_0647 + 4826411-4827343,4827437-4828060
Length = 518
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/58 (29%), Positives = 34/58 (58%)
Frame = +3
Query: 405 SQLVGRIVRDQAGVVENFDAVKF*QQKQRVAAPSNEGERDDLRDKIESVLKHVKKLNT 578
S++ GRI + G+ DA+ Q++R AA +N+ + +D D ++ +LK K++ +
Sbjct: 241 SRVPGRIEHHRQGMQRFIDAIIVEHQEKRAAAAANDDDDED-EDFLDVLLKLQKEMGS 297
>11_02_0123 -
8550193-8550213,8550434-8550682,8550787-8550834,
8550939-8551025,8551104-8551184,8551264-8551368,
8551464-8551556,8551635-8551715,8551794-8551895,
8552144-8552224,8552304-8552405,8552499-8552834,
8552920-8553006,8553275-8553493,8553575-8553769
Length = 628
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +3
Query: 426 VRDQAGVVENFDAVKF*QQKQRVAAPSNEGERDDLRD-KIESVLKHVKKLNTNSEKFMVT 602
V + V+ +VK K R PS ER + + +E + + K N+E +VT
Sbjct: 366 VNATSNYVQQVCSVKCTNAKDRRGNPSIPYERTNAKQLSLEKLAQRTKTSQRNAESSLVT 425
Query: 603 HETFKNDVGNRFEQ 644
HE N+ G F Q
Sbjct: 426 HEHVTNE-GYSFGQ 438
>04_03_0621 - 18102243-18104249
Length = 668
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +3
Query: 456 FDAVKF*QQKQRVAAPSNEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNR 635
F V+ Q+QR+ + +DL+DK+ + + + SE F+ E+ KN + +
Sbjct: 240 FHNVQVCPQRQRIIIQFPDAFEEDLKDKLGKWITQIDYM--PSEAFLDMEESNKNSIVEK 297
Query: 636 FEQ 644
F Q
Sbjct: 298 FRQ 300
>01_06_1034 + 33962813-33963802
Length = 329
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 397 WISACEK*FRLNGKLDRCPNCN 332
W AC + R++G+ CPNCN
Sbjct: 8 WCYACRRPIRVSGQDITCPNCN 29
>03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512
Length = 957
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 340 WDSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMR 465
+D D + LNE++ ++K K+DL L+ K L ++ R
Sbjct: 660 YDQDALERLNELVVKREKEKQDLERELELYRRKVHLFEVKER 701
>04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879
Length = 696
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +3
Query: 498 APSNEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRXNEL 668
A + GER + +E + +H++ + + +V H+T KN++ + E + EL
Sbjct: 111 AAAGSGERRRVHVGLEHIPRHLQ-VQLIKQNNLVHHQTLKNEISSPISVLERKSGEL 166
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = +3
Query: 480 QKQRVAAPSNEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFEL 653
+K + + E DL DKI + K L + ++ + + ND+ +FEQ +
Sbjct: 701 EKAQSSVKELESTNGDLNDKIAVLQKEGSSLASELQQLEASFKNLGNDLEQKFEQISV 758
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,914,439
Number of Sequences: 37544
Number of extensions: 261942
Number of successful extensions: 705
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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