Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120680.seq
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p...    29   2.4  
Z68342-5|CAA92774.2|  416|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.      29   2.4  
Z83244-7|CAB05829.1|  318|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z75543-6|CAA99873.3|  499|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z79695-4|CAB01969.3|  374|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
            C35C5.1 protein.
          Length = 2962

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 537  KIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRF 638
            K+E   + + KL  N +K  ++H++ KND   RF
Sbjct: 1738 KLERDFEEIVKLIQNEKKLALSHKSHKNDENRRF 1771


>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
            protein C35C5.1 protein.
          Length = 2962

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 537  KIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRF 638
            K+E   + + KL  N +K  ++H++ KND   RF
Sbjct: 1738 KLERDFEEIVKLIQNEKKLALSHKSHKNDENRRF 1771


>Z68342-5|CAA92774.2|  416|Caenorhabditis elegans Hypothetical
           protein F38E11.6a protein.
          Length = 416

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/54 (22%), Positives = 28/54 (51%)
 Frame = +3

Query: 522 DDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRXNELDAKLN 683
           D+L  +I +V +++   N + + F+V   +FKN    +F++      + +  L+
Sbjct: 303 DNLTAQISAVYRYIASHNRHDDNFLVVVPSFKNQDAEKFKRINFMEKKKEVYLD 356


>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
          Length = 2962

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 537  KIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRF 638
            K+E   + + KL  N +K  ++H++ KND   RF
Sbjct: 1738 KLERDFEEIVKLIQNEKKLALSHKSHKNDENRRF 1771


>Z83244-7|CAB05829.1|  318|Caenorhabditis elegans Hypothetical
           protein W06F12.3 protein.
          Length = 318

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/89 (23%), Positives = 45/89 (50%)
 Frame = +1

Query: 253 ANDTNAKFYNVIDFCKGLEIAHDDILDCNWDSDQVYHLNEIIFHKQKSKRDLNSLGALFA 432
           A+D    F+++++  +GL     +++D     DQVYH  +++    +S++    +G  F 
Sbjct: 222 ADDIWCLFFSLLELAEGLP--WKNVVD----QDQVYHAKQLLLRNFQSRK----MGQNFG 271

Query: 433 TKQGLLKILMRLNFDNKSNALLHLQMKAS 519
           T    L+++ R    N  N ++ L+  +S
Sbjct: 272 TFPRALELIKRTETPNYENFIVILKSCSS 300


>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical protein
            F59A2.6 protein.
          Length = 1133

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 510  EGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFE-QFELRXNELDAK 677
            EGE  +L D+IE +   VKKL   +E   V  +T    V    + + +   NEL+ K
Sbjct: 910  EGEAKELTDRIEGLEAEVKKLTAANETKAVKADTDARKVVRELQKEVKQLYNELNDK 966


>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical protein
            F59A2.6 protein.
          Length = 1133

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 510  EGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFE-QFELRXNELDAK 677
            EGE  +L D+IE +   VKKL   +E   V  +T    V    + + +   NEL+ K
Sbjct: 910  EGEAKELTDRIEGLEAEVKKLTAANETKAVKADTDARKVVRELQKEVKQLYNELNDK 966


>Z75543-6|CAA99873.3|  499|Caenorhabditis elegans Hypothetical
           protein K01D12.6 protein.
          Length = 499

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/60 (25%), Positives = 31/60 (51%)
 Frame = +3

Query: 363 FKRNYFSQAEIQTRSQLVGRIVRDQAGVVENFDAVKF*QQKQRVAAPSNEGERDDLRDKI 542
           F R +  + E +    ++  I +D   +V +  +++  Q  + +  PS++GER  LR+ I
Sbjct: 40  FVRYWRQKREAKVPQSIIEEIGKDADIIVPSAPSLRRSQSGRGMRPPSSQGERSSLRNSI 99


>Z79695-4|CAB01969.3|  374|Caenorhabditis elegans Hypothetical
           protein F27D4.4a protein.
          Length = 374

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 307 EIAHDDILDCNWDSDQVYHLNEIIFHKQKSK 399
           E+  D+  + NWDSD+   LNE++  K K+K
Sbjct: 133 EVEKDEETNENWDSDK---LNEVVNKKNKNK 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,671,147
Number of Sequences: 27780
Number of extensions: 263346
Number of successful extensions: 893
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)