Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120680.seq
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03990.1 68418.m00379 expressed protein predicted protein, Ar...    29   3.9  
At2g04340.1 68415.m00431 expressed protein                             29   3.9  
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi...    28   6.8  
At1g33560.1 68414.m04153 disease resistance protein (CC-NBS-LRR ...    28   6.8  
At3g05380.1 68416.m00588 myb family transcription factor contain...    27   8.9  
At2g43600.1 68415.m05419 glycoside hydrolase family 19 protein s...    27   8.9  

>At5g03990.1 68418.m00379 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 302

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
 Frame = +2

Query: 155 DYKKYHINVQQWSH-----IVKWDSXKCNTHSFKYRYV 253
           D+   + N   W H        WD   CN +SF Y+ V
Sbjct: 207 DHNNNNTNTDSWDHNNNFKAETWDQKNCNNNSFNYKKV 244


>At2g04340.1 68415.m00431 expressed protein
          Length = 173

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 483 KQRVAAPSNEGERDDLRDKIESVLKHVKKLNTNSEKFMV 599
           ++R  +PSN+   + LR KI  + K  K+ N    +F+V
Sbjct: 13  RRRFHSPSNDAPTETLRKKIADLQKSKKRRNPIKNQFLV 51


>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
           similarity to unknown protein (ref|NP_005638.1)
          Length = 613

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +3

Query: 420 RIVRDQAGVVENFDAVKF*QQKQRVAAPSN-EGERDDLRDKIESVLKHVKKLNTNSEKFM 596
           +I R++    E  +   F ++K R+      E ER+  R+KIE    H K+L  ++++ M
Sbjct: 162 KIEREKEREREKMEREIFEREKDRLKLEKEREIEREREREKIEREKSHEKQLG-DADREM 220

Query: 597 VTHETFKNDVGN 632
           V  +T K   G+
Sbjct: 221 VIDQTDKEIAGD 232


>At1g33560.1 68414.m04153 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 787

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 274 FYNVIDFCKGLEIAHDDILDCN-WDSDQVYHLNEIIFHKQKSKRDLNSLGALF 429
           FY +++  + L    + +L CN W+   VYH N++   +++  R LNS   LF
Sbjct: 69  FYEILEKARKL---CEKVLRCNRWNLKHVYHANKMKDLEKQISRFLNSQILLF 118


>At3g05380.1 68416.m00588 myb family transcription factor contains
           Pfam profile:PF00249 Myb-like DNA-binding domain
          Length = 1055

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 516 ERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRXNEL-DAKL 680
           ER+ L+   ESV KH  +L T + + + T       VGNR      +  E+ D K+
Sbjct: 694 EREKLKQYRESVRKHYTELRTGAREGLPTDLARPLAVGNRVIAIHPKTREIHDGKI 749


>At2g43600.1 68415.m05419 glycoside hydrolase family 19 protein
           similar to basic endochitinase CHB4 precursor SP:Q06209
           from [Brassica napus]
          Length = 273

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 250 RANDTNAKFYNVIDFCKGLEIAHDDILDC 336
           R +DT  K    I+FC+ L +  D  LDC
Sbjct: 245 RRDDTKNKVKQYIEFCEMLGVTPDQGLDC 273


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,422,381
Number of Sequences: 28952
Number of extensions: 221996
Number of successful extensions: 636
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)