Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120679.seq
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,557...    29   4.6  
01_06_1509 - 37855894-37856679,37856766-37856952,37857508-378575...    28   8.1  

>04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,
            5579676-5579795,5581616-5581744,5581828-5581953,
            5582945-5583000,5583084-5583183,5585155-5585272,
            5585374-5585583,5585902-5586226,5587094-5587187,
            5588021-5588129,5588246-5588514,5589153-5589280,
            5589983-5590217,5590858-5591046,5591326-5591609,
            5591698-5591890,5592040-5592207,5592429-5592514,
            5594391-5594550
          Length = 1412

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 289  IMGVLTILAVQC-WNLYVQLKEMRRNIYIKRRAEAEKASYDHYC 417
            I  +L++LA  C W+     K+ RR   I R  E  K+ YDH C
Sbjct: 1000 IHSILSVLAYPCAWSW----KQWRRRKKIHRLQEYVKSEYDHSC 1039


>01_06_1509 -
           37855894-37856679,37856766-37856952,37857508-37857580,
           37857772-37857816,37858004-37858010
          Length = 365

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
 Frame = -3

Query: 236 LGT*CIFCKGSHIHSFGSRFRHFRSQFPNT-----R*SSSTPIPNRSDD 105
           L T C+FC+G   H+ G   +  R   P T       SSS PI N  DD
Sbjct: 34  LPTNCLFCRGVDSHAPGGLLKFLRKTTPRTEQHVCNGSSSQPI-NVGDD 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,490,075
Number of Sequences: 37544
Number of extensions: 308615
Number of successful extensions: 703
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)