Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120679.seq
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38919| Best HMM Match : Fumarate_red_D (HMM E-Value=4.7)            29   4.7  
SB_35866| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34)               29   4.7  
SB_3948| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  

>SB_38919| Best HMM Match : Fumarate_red_D (HMM E-Value=4.7)
          Length = 479

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 338 TYKFQHCTASIVSTPIMITE*F*LNTVGRDPLQSLGT*CIFC 213
           T +F+  T  +VS P+++   F    +GR+ L+ L    +FC
Sbjct: 78  TRRFEQPTCKVVSPPVLLLTIFDRKRLGRELLERLVVLTLFC 119


>SB_35866| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34)
          Length = 758

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 26/115 (22%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
 Frame = +1

Query: 166 RKCRNLEPKLCI*EPLQKMHHVPSDCKGSRPTVFNQNYSVIIMGVLTILAVQCWNLYVQL 345
           ++C  L+ +  I E   K     S  +G+   ++ ++  + +   + I + +      +L
Sbjct: 459 KECLELDNENKILEDEVKQLSEGSTPEGNDLDIYGRSEKLCLDDEVPISSCELEAFETRL 518

Query: 346 KEM-RRNIYIKRRAEAEKASYD--HYCDIDYCLEEERESNSKLLEVVSEGRNSSS 501
            ++ R+N  ++  A A++A        DI+  LEE +ESNS +L  + E +  +S
Sbjct: 519 SDLERQNKALRTGASADQAMIQCLEDNDIEPALEETKESNSSMLVELHEAQRQNS 573


>SB_3948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1112

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +1

Query: 316 VQCWNLYVQLKEMRRNIYIKRRAEAEKASYDHYCDIDYCLEEE 444
           +QC ++ V L +MR  +  K         Y  YC IDY   EE
Sbjct: 28  LQCLHISVDLFDMRPTVSFKAIIVNRVIIYREYCCIDYRWVEE 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,463,299
Number of Sequences: 59808
Number of extensions: 380468
Number of successful extensions: 964
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)