Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120679.seq
         (694 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49724-1|AAB08449.1|  635|Drosophila melanogaster merlin protein.      29   4.5  
AY094998-1|AAM11326.1|  635|Drosophila melanogaster GH01330p pro...    29   4.5  
AE014298-2915|AAF49005.1|  635|Drosophila melanogaster CG14228-P...    29   4.5  
AE014297-1899|AAF55098.1|  556|Drosophila melanogaster CG14855-P...    29   7.9  

>U49724-1|AAB08449.1|  635|Drosophila melanogaster merlin protein.
          Length = 635

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +1

Query: 373 KRRAEAEKASYDHYCDIDYCLEEERESNSKLLEVVSEGRNSSS 501
           KR AE EK   +  C        ERE+ ++LLE ++ GR SS+
Sbjct: 440 KREAETEKLRKELIC----AKMAEREATARLLEFLNSGRKSST 478


>AY094998-1|AAM11326.1|  635|Drosophila melanogaster GH01330p
           protein.
          Length = 635

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +1

Query: 373 KRRAEAEKASYDHYCDIDYCLEEERESNSKLLEVVSEGRNSSS 501
           KR AE EK   +  C        ERE+ ++LLE ++ GR SS+
Sbjct: 440 KREAETEKLRKELIC----AKMAEREATARLLEFLNSGRKSST 478


>AE014298-2915|AAF49005.1|  635|Drosophila melanogaster CG14228-PA
           protein.
          Length = 635

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +1

Query: 373 KRRAEAEKASYDHYCDIDYCLEEERESNSKLLEVVSEGRNSSS 501
           KR AE EK   +  C        ERE+ ++LLE ++ GR SS+
Sbjct: 440 KREAETEKLRKELIC----AKMAEREATARLLEFLNSGRKSST 478


>AE014297-1899|AAF55098.1|  556|Drosophila melanogaster CG14855-PA
           protein.
          Length = 556

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +1

Query: 343 LKEMRRNIYIKRRAEAEKASYDH--YCDIDYCLEEERESNSKLLEVVSEGRNSSS 501
           ++ + R   I RR  A+K   D   YC+  Y  ++ +E ++KLL+++   R  S+
Sbjct: 274 IRRLERVAKINRRQVADKDFKDFRIYCEQHYRKDKNQEEHAKLLDMLKTPRMRST 328


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,925,175
Number of Sequences: 53049
Number of extensions: 547236
Number of successful extensions: 1204
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3026039247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)