Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120679.seq
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu...    28   7.3  
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.      28   7.3  
AF016657-1|AAB93653.1|  361|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z81038-2|CAB02757.1|  454|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
           guidance protein 2,isoform a protein.
          Length = 2886

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 215 CKGSHIHSFGSRFRHFRSQFPNTR*SSSTPIPNRS 111
           C  SH+ S  +   H    FPNT  S+S+ + N S
Sbjct: 704 CHSSHVTSNSTHSTHISVSFPNTVTSASSILSNSS 738


>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
          Length = 2914

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 215 CKGSHIHSFGSRFRHFRSQFPNTR*SSSTPIPNRS 111
           C  SH+ S  +   H    FPNT  S+S+ + N S
Sbjct: 704 CHSSHVTSNSTHSTHISVSFPNTVTSASSILSNSS 738


>AF016657-1|AAB93653.1|  361|Caenorhabditis elegans Hypothetical
           protein C16C4.7 protein.
          Length = 361

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 210 RFSYTQFWLKISAFS*SISKYTIEFQHT 127
           RFSY++ WL IS F  +I  +   FQH+
Sbjct: 181 RFSYSRIWLHISIFDSNI-PFMAVFQHS 207


>Z81038-2|CAB02757.1|  454|Caenorhabditis elegans Hypothetical
           protein C25A1.4 protein.
          Length = 454

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 94  RCFISSLRFGIGVLELYRVFG 156
           R FI++L F +G  +LY VFG
Sbjct: 189 RIFIANLAFNVGTDKLYEVFG 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,419,693
Number of Sequences: 27780
Number of extensions: 287500
Number of successful extensions: 840
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)