Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120679.seq
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41570.1 68415.m05137 hypothetical protein similar to zinc fi...    29   2.2  
At3g02580.1 68416.m00249 delta 7-sterol-C5-desaturase (STE1) ide...    28   6.8  
At5g47020.1 68418.m05795 glycine-rich protein strong similarity ...    27   8.9  

>At2g41570.1 68415.m05137 hypothetical protein similar to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 418

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 149 YLEIDYENAEILSQNCVYENLYKKCIMCRAIVRDHG 256
           + EI     EI+S    YE + K+C +C+ +  + G
Sbjct: 180 FKEIQLPTGEIVSVTFDYERIRKRCFLCQRLTHEKG 215


>At3g02580.1 68416.m00249 delta 7-sterol-C5-desaturase (STE1)
           identical to sterol-C5-desaturase GB:AAD12944 GI:4234768
           from [Arabidopsis thaliana]
          Length = 281

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -1

Query: 220 FFVKVLIYTVLAQDFGIFVVNFQIHDRVPAHRF 122
           +FV + IY V  + FGI+ ++ ++HD  P +++
Sbjct: 128 YFVYIAIYLVFVE-FGIYWMHRELHDIKPLYKY 159


>At5g47020.1 68418.m05795 glycine-rich protein strong similarity to
            unknown protein (emb|CAB87688.1)
          Length = 1417

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 289  IMGVLTILAVQC-WNLYVQLKEMRRNIYIKRRAEAEKASYDHYC 417
            +  +L++LA  C W+     K+ RR   I R  E  K+ YDH C
Sbjct: 978  VHSILSVLANPCAWSW----KQWRRRRKIHRLQEYVKSQYDHSC 1017


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,307,150
Number of Sequences: 28952
Number of extensions: 253044
Number of successful extensions: 634
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)