Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120678.seq
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p...    29   0.63 
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    28   1.5  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    27   3.4  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    26   4.4  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   4.4  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    26   5.9  
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    25   7.8  

>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 392

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 300 EAQKSLDKIFLMTYDFKGAWSNTDLGYQTTVYAPSWNSEELYTTHYAV 443
           E +KSL K  +  +D  G+     +G      A SWN+E +   H A+
Sbjct: 168 ETKKSLPKQTIHVHDISGSAMIVLIGESQVKSALSWNNETILLIHNAI 215


>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 142 RVSPFAARKFPIDVDTIK-KFPHLQKFLNRLYKNVSFFNVVHEIERVR 2
           R  P   + F  ++ TI+  +PH+ ++L RLY     F+   + + ++
Sbjct: 239 RFDPVYVQHFKCNIGTIRHNYPHINQWLKRLYWKHPAFHETTDFKHIK 286


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 118 KFPIDVDTIKKFPHLQKFLNRLYKNVSFFNVVHEIER 8
           K+ I  D IKKF   +K    L  N   F+ +H I +
Sbjct: 410 KYIIPTDYIKKFLTAKKLFTDLPSNNELFSFIHNIPK 446


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/22 (54%), Positives = 18/22 (81%), Gaps = 3/22 (13%)
 Frame = -3

Query: 67  FLNRLYKNVSFFNV---VHEIE 11
           FL+++Y+NVS FNV   +H+IE
Sbjct: 37  FLSKIYENVSNFNVPRKLHDIE 58


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 482 NCGRRHVRPGWTGVTNYTNGNYFSGTGNGPVS 577
           N G   +  GWTG T  T+    SG+  GP +
Sbjct: 708 NYGYTTITTGWTGSTTLTSIVTHSGSETGPTT 739


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -1

Query: 198 QLIQQQNVCFGVTSASPSDGLAPLPPGNSQSTSTPSK 88
           +++ QQ+     T+ SPS   A L  GNSQ+ ST SK
Sbjct: 823 KIVNQQSPSAQQTTRSPSKVSATLNAGNSQA-STSSK 858


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 132 PLPPGNSQSTSTPSKN 85
           PLPP N QS S+ S+N
Sbjct: 250 PLPPSNVQSNSSSSEN 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,009,520
Number of Sequences: 5004
Number of extensions: 66324
Number of successful extensions: 255
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)