Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120678.seq
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0102 - 12565917-12566258                                         29   2.6  
02_01_0132 + 950855-950921,951554-951924,952553-952688,952956-95...    29   3.5  
05_07_0041 + 27261968-27262145,27262160-27262717,27262814-27263589     29   4.6  
01_01_0201 + 1746088-1747086,1748735-1748806,1750106-1750168,175...    29   4.6  
06_03_1146 - 28004896-28005554,28005664-28005844                       28   6.0  
01_01_0135 + 1231687-1232188,1234489-1234564,1234646-1234743,123...    28   6.0  
11_04_0234 + 15187065-15188241,15188316-15188494                       28   8.0  
04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785...    28   8.0  

>01_03_0102 - 12565917-12566258
          Length = 113

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 86  FFDGVDVDWEFPGGKGANPSLG 151
           F+ G +++W FPG  G  P +G
Sbjct: 55  FYPGPNINWVFPGPNGVTPQVG 76


>02_01_0132 +
           950855-950921,951554-951924,952553-952688,952956-953092,
           953168-953291,954041-954489
          Length = 427

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +2

Query: 515 TGVTNYTNGNYFSGTGNGPVSGTWEDGVVDYRQIQKDLNNYVYTFDSAAQAFVRFR 682
           TG  +    ++ + +G+G  S  ++DGV    QI +  N   +TF     A   FR
Sbjct: 40  TGKLSSVGSSFMASSGSGGTSSGFDDGVYPEGQILEAPNLRTFTFIELRTATKNFR 95


>05_07_0041 + 27261968-27262145,27262160-27262717,27262814-27263589
          Length = 503

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -3

Query: 580 ARHRPVASAGKIVAIRIICYAGPARPYMATPTIILLGSTPCSSNASTA*CVVYSS 416
           AR  P A+A ++ A    C+  PAR   A  T  L+ ST     A+T   +  S+
Sbjct: 60  AREVPAAAAPRL-ATAATCFTAPARLLAAATTAALIASTTACLLAATTGVIASST 113


>01_01_0201 +
           1746088-1747086,1748735-1748806,1750106-1750168,
           1750355-1750489,1750604-1750669
          Length = 444

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 162 TSASPSDGLAPLPPGNSQSTSTPSKNFHTCKNSLTDSTK 46
           +SASP+    P P  +S S+++ +   H   +S+ ++TK
Sbjct: 173 SSASPASSATPTPTASSSSSTSAAPFAHPSPSSVLEATK 211


>06_03_1146 - 28004896-28005554,28005664-28005844
          Length = 279

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 162 TSASPSDGLAPLPPGNSQSTSTPS 91
           T+ SPS  ++P+ P  + +TSTPS
Sbjct: 183 TTPSPSPSVSPMAPAPAPTTSTPS 206


>01_01_0135 +
           1231687-1232188,1234489-1234564,1234646-1234743,
           1234841-1235355
          Length = 396

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 342 DFKGAWSNTDLGYQTTVYAPSWNSEELYTTHYAVDALLEQGV 467
           DF+ +  N+D+ Y      P      L TTHY  D ++E GV
Sbjct: 274 DFRNSTVNSDMRYMEWDDPPQMEPHFLNTTHY--DEIVESGV 313


>11_04_0234 + 15187065-15188241,15188316-15188494
          Length = 451

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 38  RNVFVESVKEFLQVWKFFDGVDVDWEFPGGKGANPSLGD 154
           R  F+ S  E  +    FDG+D+ W FP  +    +LGD
Sbjct: 139 RRAFINSSIELARA-NGFDGLDLAWRFPATQLDMENLGD 176


>04_04_1250 +
           32077590-32078000,32078132-32078308,32078437-32078561,
           32078629-32078761,32078866-32079015,32079105-32079158,
           32079437-32079532,32080021-32080095,32080723-32080824,
           32080903-32081589,32081686-32081817,32081916-32082023,
           32082170-32082319
          Length = 799

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 100 DTIKKFPHLQKFLNRLYKNVSFFNVVHEIERV 5
           DT++ F  LQ   +R  K ++F ++VH I R+
Sbjct: 143 DTMELFMELQVIGDRAVKKLAFSHIVHSIRRM 174


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,276,713
Number of Sequences: 37544
Number of extensions: 481064
Number of successful extensions: 1527
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1525
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)