Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120678.seq
(687 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 45 7e-05
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 44 9e-05
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 44 2e-04
SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32) 42 6e-04
SB_46513| Best HMM Match : BioW (HMM E-Value=6) 31 0.87
SB_53237| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_52302| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29) 29 2.7
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23) 29 2.7
SB_44452| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_3761| Best HMM Match : Tom22 (HMM E-Value=0.14) 29 4.7
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17) 28 6.2
SB_25249| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_12700| Best HMM Match : POPLD (HMM E-Value=1.9) 28 6.2
SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34) 28 8.1
SB_48973| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 46.4 bits (105), Expect = 2e-05
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Frame = +3
Query: 246 INKAISAGYDKI-AVVNYAEAQKSLDKIFLMTYDFKGAWSNTDLGYQTTVYAPSWNSEEL 422
+ A+SAG+ + A + LD I LMTYD G W G+ T + P +
Sbjct: 562 LTAAVSAGHGTVDAAYEVHKLAGILDWINLMTYDLHGPWEPYT-GHHTALVGPPGDK--- 617
Query: 423 YTTHYAVDALLEQGVDPNKIIVGVAMYGRA 512
T YAV +E+G+ KI +G+A YG A
Sbjct: 618 LTVSYAVKYWMEKGMPCGKIALGMANYGHA 647
Score = 34.3 bits (75), Expect = 0.094
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 38 RNVFVESVKEFLQVWKFFDGVDVDWEFPGGKGANP 142
R F+ S+ + + F DG D+DWE+P +G +P
Sbjct: 497 RTTFISSLLQLSDKYDF-DGFDLDWEYPASRGNSP 530
>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 46.0 bits (104), Expect = 3e-05
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Frame = +3
Query: 240 LRINKAISAGYDKIAV-VNYAEAQKSLDKIFLMTYDFKGAWSNTDLGYQTTVYAPSWNSE 416
L + A+SAG + + ++LD I LM+YD G W +T G+ + S +
Sbjct: 178 LLLTAAVSAGETTVKNGYEISALGQALDWINLMSYDLHGDWEDTT-GHHAAM--DSSTGD 234
Query: 417 ELYTTHYAVDALLEQGVDPNKIIVGVAMYGRA 512
L TH AVD + G+ NKI +G+ +YGR+
Sbjct: 235 PLTVTH-AVDLWIAGGMPSNKIALGIPLYGRS 265
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 2 SDPFYFM-HDVEKRNVFVESVKEFLQVWKFFDGVDVDWEFPGGKGANP 142
S PF M +R +F++ FL+ FDG+D+DWE+PG +G+ P
Sbjct: 103 SGPFQDMVSTASRRKIFIDDAILFLRN-HMFDGLDLDWEYPGARGSPP 149
>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 569
Score = 44.8 bits (101), Expect = 7e-05
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Frame = +3
Query: 240 LRINKAISAGYDKI-AVVNYAEAQKSLDKIFLMTYDFKGAWSNTDLGYQTTVYAPSWNSE 416
L + A++AG I + + LD I LM YD +G W + G+ T + P E
Sbjct: 291 LLLTAAVAAGKATIDKAYEVDKIGQILDLINLMAYDLRGMW-EPETGHHTALEGPP--GE 347
Query: 417 ELYTTHYAVDALLEQGVDPNKIIVGVAMYGRA 512
EL T +A +++G +KI +G+ YGRA
Sbjct: 348 EL-TVSFAAQYWIDKGAPASKIALGLGTYGRA 378
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +2
Query: 38 RNVFVESVKEFLQVWKFFDGVDVDWEFPGGK-GANP 142
R VF++S L+ W F DG D+DWE+PG + G++P
Sbjct: 228 RKVFIDSSIAMLRQWNF-DGFDLDWEYPGNRVGSDP 262
>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 270
Score = 44.4 bits (100), Expect = 9e-05
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +2
Query: 38 RNVFVESVKEFLQVWKFFDGVDVDWEFPGGKGANP 142
R VF++SV L+ W F DG+D+DWE+P +G +P
Sbjct: 116 RKVFIDSVIRILRTWGF-DGLDLDWEYPATRGGSP 149
>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 829
Score = 43.6 bits (98), Expect = 2e-04
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = +2
Query: 32 EKRNVFVESVKEFLQVWKFFDGVDVDWEFPGGKGANP 142
EKR +F++S E L+ FDG+D+DWE+PG +G +P
Sbjct: 502 EKRAIFIKSAIETLRT-NGFDGLDLDWEYPGMRGGSP 537
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = +2
Query: 32 EKRNVFVESVKEFLQVWKFFDGVDVDWEFPGGKGANP 142
EKR +F++S E L+ F DG+D+DWE+PG +G +P
Sbjct: 117 EKRAIFIKSAIETLRTHGF-DGLDLDWEYPGMRGGSP 152
Score = 33.1 bits (72), Expect = 0.22
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Frame = +3
Query: 240 LRINKAISAGYDKIAVVNYAEA-QKSLDKIFLMTYDFKGAWSNTDLGYQTTVYAPSWNSE 416
L + A++AG I E K LD I +MTYD G W G+ T + P +
Sbjct: 567 LLLTAAVAAGLWTIKDAYDIEGISKPLDWINVMTYDLHGTWE-PKTGHHTAM-GPDGDKL 624
Query: 417 EL-YTTHYAVDAL-------LEQGVDPNKIIVGVAMYGRA 512
L + Y ++ + G+ NKI++G+ YGRA
Sbjct: 625 TLPFAIWYWMNNRDTWEKPGIRNGMPANKIVLGLGTYGRA 664
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 246 INKAISAGYDKI-AVVNYAEAQKSLDKIFLMTYDFKGAW 359
+ A++AG I + A+ + LD I LMTYD G W
Sbjct: 184 LTAAVAAGLWTIKGAYDIADIAEPLDWINLMTYDLHGTW 222
>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
Length = 561
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 2 SDPFYFM-HDVEKRNVFVESVKEFLQVWKFFDGVDVDWEFPGGKGANP 142
S PF M +R +F++ FL+ FDG+D+DWE+PG +G+ P
Sbjct: 27 SGPFQDMVSTASRRKIFIDDAILFLRN-HMFDGLDLDWEYPGARGSPP 73
>SB_46513| Best HMM Match : BioW (HMM E-Value=6)
Length = 216
Score = 31.1 bits (67), Expect = 0.87
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Frame = +2
Query: 275 QDCRG--KLRRSA-KVIRQNISHDLRF*RGLVKHGFGLPNNSLRAKLELGRAVHYTLRCR 445
QD G LRR +V + + ++ + GLV L ++L K+++ +R R
Sbjct: 108 QDMEGGDSLRRERNRVAKGKMLNNRKSMTGLVSKSVSLNASALSTKMKINGEHSDIIRSR 167
Query: 446 --CVTGTRRRSQQNNCGRRHVR 505
C TGTR SQ N G +++
Sbjct: 168 DDCTTGTRSDSQLKNRGENNIK 189
>SB_53237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 825
Score = 31.1 bits (67), Expect = 0.87
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +1
Query: 484 LWASPCTAGLDRRNKLYEWQLFFRHW--QRAGVGHVGGRCCRLSSNSKRS 627
L P L+ +NK+ ++ FF W +AG G + G+C LSS+ K+S
Sbjct: 256 LCLEPMEMYLENQNKVCIYE-FFGLWVLPKAGTGWLRGQCVNLSSSDKKS 304
>SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -1
Query: 186 QQNVCFGVTSASPSDGLAPLPPGNSQSTSTPSKNFHT 76
Q N G++ +P +G++PL +S S+S+ + FHT
Sbjct: 42 QLNRRHGLSPPTPPEGISPLSSSSSASSSSAASPFHT 78
>SB_52302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 140
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 207 HFAQLIQQQNVCFGVTSASPSDGLA-PLPPGNSQSTSTPSKNFH 79
HF + N+CF S SP D L PP S S S++++
Sbjct: 3 HFTDTLISANICFTSNSCSPGDPLVLERPPPRWSSNSPYSESYY 46
>SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)
Length = 1851
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -3
Query: 544 VAIRIICYAGPARPYMATPTIILLGSTPCSSNASTA 437
VA+R CY GP P T T LL + P + STA
Sbjct: 130 VAVRHACYVGPRFPRSLTLTQKLLYAVPATPVESTA 165
>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
Length = 3368
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -1
Query: 183 QNVCFGV-TSASPSDGLAPLPPGNSQSTSTPSKNFHTCKNSLTDSTKTFLFST 28
Q C G T+ P + PP ++ STS K + + ++T TF F+T
Sbjct: 2494 QGTCHGQETNDKPFNSFTFAPPKDNDSTSNQDKTSYGSQQVNNNTTSTFKFAT 2546
>SB_44452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -1
Query: 168 GVTSASPSDGLAPLPPGNSQSTSTPSKNFHT 76
G++ +P +G++PL +S S+S+ + FHT
Sbjct: 48 GLSPPTPPEGISPLSAFSSTSSSSAASPFHT 78
>SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = -1
Query: 207 HFAQLIQQQNVCFGVTSASPSDGLAPLPPGNSQSTSTPSKNFHTCKNSLTDSTKTFLFS 31
++A +Q F + D +A P ST+TP + FH S +T T L S
Sbjct: 894 YYASSPSRQTALFNGLRSDDEDDIAEEQPDYHSSTATPPETFHNNVPSCQSATATPLNS 952
>SB_3761| Best HMM Match : Tom22 (HMM E-Value=0.14)
Length = 109
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 201 AQLIQQQNVCFGVTSASPSDGLAPLPPG 118
AQL QQ+ + G ++AS G+ +PPG
Sbjct: 76 AQLQQQRQILLGPSAASGGGGIGGVPPG 103
>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
Length = 1571
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/56 (32%), Positives = 23/56 (41%)
Frame = +2
Query: 413 GRAVHYTLRCRCVTGTRRRSQQNNCGRRHVRPGWTGVTNYTNGNYFSGTGNGPVSG 580
G V TLRC R S + +CG V T T G G +GP++G
Sbjct: 737 GECVPQTLRCNGQMDCRDASDEQDCGIPTVTT--TSAPQPTKGKTVLGDPSGPLAG 790
>SB_25249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 443
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 383 NNSLRAKLELGR-AVHYTLRCRCVTGTRRRSQQNNCGRRHVRPGWTGVTNYTNGNYF 550
+N+ RA ELGR + +CR + + S N + R +T ++NY N N++
Sbjct: 19 SNACRA--ELGRFPLRTKAKCRAIKLWLKLSNNNGNNEKLSRKAFTTISNYENKNFW 73
>SB_12700| Best HMM Match : POPLD (HMM E-Value=1.9)
Length = 461
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 544 VAIRIICYAGPARPYMATPTIILLGSTPCSSNAS 443
VA+R CY GP +A + + +TP S AS
Sbjct: 123 VAVRHACYVGPRSLTLAQKLLYAVPATPVESTAS 156
>SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)
Length = 1691
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 405 WNSEELYTTHYAVDALLEQGVDPNKIIVG 491
W S+E AVD +++ VDP++ +VG
Sbjct: 1474 WGSQESAMDSIAVDLVMDSQVDPDEQVVG 1502
>SB_48973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 175 MFWRHLRIAQRRVSPFAARKFPIDVDTIKKFPHLQK 68
+F + L+ QRRV F ++P+D D + +LQK
Sbjct: 109 LFGKWLKTNQRRVCMFTDPEYPLDYDKRMECSNLQK 144
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,456,606
Number of Sequences: 59808
Number of extensions: 545818
Number of successful extensions: 1607
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1577
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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