Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120678.seq
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          25   0.68 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      25   0.68 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   6.3  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   8.3  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   8.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.3  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 5   DPFYFMHDVEKRNVFVESVKEFLQVWKFFDGVDVDWEFPG 124
           D F+ M+D+E   +F E ++  L   K F   +  + FPG
Sbjct: 563 DCFFTMNDLEPSEIFYEKIETSLNSDKPFTYNERIFGFPG 602


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 5   DPFYFMHDVEKRNVFVESVKEFLQVWKFFDGVDVDWEFPG 124
           D F+ M+D+E   +F E ++  L   K F   +  + FPG
Sbjct: 563 DCFFTMNDLEPSEIFYEKIETSLNSDKPFTYNERIFGFPG 602


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 13/87 (14%)
 Frame = +3

Query: 270 YDKIAVVNYAEAQKSLDKIFLMTYDF-----------KGAWSNTDLGYQTTVYAPSWNSE 416
           +D   +VN       + K F  TY++           KG  ++  L   TT+    W ++
Sbjct: 238 FDNATIVNNGPEAAKMAKAFTYTYNYSMYWGQGHAILKGLKTSIILMNGTTLPQIMWGTK 297

Query: 417 E--LYTTHYAVDALLEQGVDPNKIIVG 491
           E    T  Y V+ +LE G   N  + G
Sbjct: 298 ETSTRTDAYTVEIVLEPGTGINVTLKG 324


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -2

Query: 554 RKNSCHSYNLLRRSSPAVHGDAH-NY 480
           R+NSC+ YN   R    + G+   NY
Sbjct: 371 RQNSCNIYNASSRMENNLRGETQSNY 396


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 131 LCRPEIPNRRRHHQKISTLAKIP 63
           +CRP+I     H  K+ T+ + P
Sbjct: 147 ICRPKIHVFSLHDNKLITMYRFP 169


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 539 GNYFSGTGNGPVSGTWEDGV 598
           G+Y S +G+ PVS    +G+
Sbjct: 65  GSYDSSSGDSPVSSHSSNGI 84


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/48 (20%), Positives = 21/48 (43%)
 Frame = +3

Query: 345 FKGAWSNTDLGYQTTVYAPSWNSEELYTTHYAVDALLEQGVDPNKIIV 488
           F G + +T++G +       +N  E   TH  +D      +  +K ++
Sbjct: 295 FNGWYMSTEIGSRDLCDVQRYNLLETIATHMGLDTRTSTSLWKDKAMI 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,344
Number of Sequences: 438
Number of extensions: 4693
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)