Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120678.seq
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68160.1 68414.m07786 expressed protein                             31   0.95 
At1g34095.1 68414.m04227 expressed protein ; expression supporte...    31   0.95 
At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein si...    30   1.7  
At5g16715.1 68418.m01957 tRNA synthetase class I (I, L, M and V)...    28   5.0  
At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR...    28   6.7  
At1g68740.1 68414.m07857 EXS family protein / ERD1/XPR1/SYG1 fam...    28   6.7  
At1g55980.1 68414.m06421 expressed protein                             28   6.7  
At5g10090.1 68418.m01169 tetratricopeptide repeat (TPR)-containi...    27   8.8  
At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein si...    27   8.8  
At1g72670.1 68414.m08404 calmodulin-binding family protein low s...    27   8.8  

>At1g68160.1 68414.m07786 expressed protein
          Length = 273

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +2

Query: 434 LRCRCVTGTRRRSQQNNCGRR 496
           LRCR +   RR+S++ NCGRR
Sbjct: 121 LRCRWLRRKRRKSEELNCGRR 141


>At1g34095.1 68414.m04227 expressed protein ; expression supported
           by MPSS
          Length = 203

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -2

Query: 662 ERRCQTCTHNC*DLFEFDD-NLQHRPPTCPTPARCQCRKNSCH 537
           E+ C  CT  C D FE D    QHR  + PT  RC  R    H
Sbjct: 107 EKWCDFCT--CDDYFESDCWKKQHRDVSLPTGVRCFVRNKPWH 147


>At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 398

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 22/67 (32%), Positives = 31/67 (46%)
 Frame = +3

Query: 312 SLDKIFLMTYDFKGAWSNTDLGYQTTVYAPSWNSEELYTTHYAVDALLEQGVDPNKIIVG 491
           SLD I LM YDF G   +T  G   ++Y P+    +  +    V    E G+   K ++G
Sbjct: 178 SLDWINLMAYDFYGPGWSTVTGPPASLYLPT----DGRSGDSGVRDWTEAGLPAKKAVLG 233

Query: 492 VAMYGRA 512
              YG A
Sbjct: 234 FPYYGWA 240


>At5g16715.1 68418.m01957 tRNA synthetase class I (I, L, M and V)
           family protein similar to SP|P11931 Valyl-tRNA
           synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (VALRS)
           {Bacillus stearothermophilus}; contains Pfam profile
           PF00133: tRNA synthetases class I (I, L, M and V)
          Length = 970

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 139 VSPFAARKFPIDVDTIKKFPHLQKFLNRLYKNVSFFNVVHEIERV 5
           VSP+     P +V++IK+F +LQ  L R  +N      V  ++R+
Sbjct: 789 VSPWPQNSLPRNVESIKRFENLQA-LTRAIRNARAEYSVEPVKRI 832


>At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1226

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 92   DGVDVDWEFPGGKGANPSLGDAEVTPKHTFCCWMSCAK 205
            +G  +++ FP G+ +N     A +  +H F  ++SC+K
Sbjct: 1028 EGSWIEFSFPVGRWSNQGNIVANIASEHVFIGYISCSK 1065


>At1g68740.1 68414.m07857 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 784

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 548 FSGTGNGPVSGTWEDGVVDYRQIQKDLNNYVYTFDSAAQ 664
           F+    G +   W+D  VDY Q++KDL   ++ F +  +
Sbjct: 4   FTKQFEGQLVPEWKDAFVDYSQLKKDLKK-IHLFTNGVE 41


>At1g55980.1 68414.m06421 expressed protein
          Length = 464

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 113 EFPGGKGANPSLGDAEVTPKHTFCCWMSCAKC*TTSKCKPAGFT 244
           E   G+  NP+    EV P++ F C +  AK     +CKP   T
Sbjct: 101 EVSTGEATNPASDPHEVEPENAFRCKLHKAK--AQKECKPMAAT 142


>At5g10090.1 68418.m01169 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 594

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 26/95 (27%), Positives = 37/95 (38%)
 Frame = +2

Query: 341 RF*RGLVKHGFGLPNNSLRAKLELGRAVHYTLRCRCVTGTRRRSQQNNCGRRHVRPGWTG 520
           RF      +G GL ++S  + L   RA      C    G   R+ ++      VRPG   
Sbjct: 486 RFQEACTAYGEGLDHDSRNSVLLCNRAA-----CLSKMGQFDRAVEDTSAALAVRPG--- 537

Query: 521 VTNYTNGNYFSGTGNGPVSGTWEDGVVDYRQIQKD 625
              YT         N  + G WE  V DY  ++K+
Sbjct: 538 ---YTKARLRRADCNAKL-GNWESAVGDYEILRKE 568


>At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 261

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 8/11 (72%), Positives = 11/11 (100%)
 Frame = +2

Query: 89  FDGVDVDWEFP 121
           FDG+D+DWE+P
Sbjct: 24  FDGLDLDWEYP 34


>At1g72670.1 68414.m08404 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 414

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 602 LQHRPPTCPTPARCQCRKNSCHSYNLLRRSSP 507
           L H+P TCP+PA+   ++ S    N   +SSP
Sbjct: 216 LTHQPRTCPSPAKAS-KQGSVKKNNGSCKSSP 246


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,877,296
Number of Sequences: 28952
Number of extensions: 359786
Number of successful extensions: 1122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)