Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120677.seq
         (691 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450 ...    25   0.77 
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.4  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.4  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.4  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.4  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.4  

>AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 127

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 15/51 (29%), Positives = 20/51 (39%)
 Frame = +1

Query: 280 DPKLLSGEELVAKGVTRTEGALPIIGLKEVVPNGSWLEQKQIQVALEARKH 432
           D KL SG+  V  G T   G   +  L+E  PN    +         A +H
Sbjct: 72  DLKLASGDYTVPAGCTVVIGTFKVHRLEEYYPNPDKFDPDNFLPERTANRH 122


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 594 IVLLQVLGTIFFLDDVHRTASIHQ 523
           +V   V+ T+  L+  HRTA IH+
Sbjct: 284 MVASSVVLTVVVLNYHHRTADIHE 307


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 594 IVLLQVLGTIFFLDDVHRTASIHQ 523
           +V   V+ T+  L+  HRTA IH+
Sbjct: 284 MVASSVVLTVVVLNYHHRTADIHE 307


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 594 IVLLQVLGTIFFLDDVHRTASIHQ 523
           +V   V+ T+  L+  HRTA IH+
Sbjct: 284 MVASSVVLTVVVLNYHHRTADIHE 307


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 594 IVLLQVLGTIFFLDDVHRTASIHQ 523
           +V   V+ T+  L+  HRTA IH+
Sbjct: 284 MVASSVVLTVVVLNYHHRTADIHE 307


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 594 IVLLQVLGTIFFLDDVHRTASIHQ 523
           +V   V+ T+  L+  HRTA IH+
Sbjct: 284 MVASSVVLTVVVLNYHHRTADIHE 307


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,790
Number of Sequences: 336
Number of extensions: 3478
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)