Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120677.seq
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   0.84 
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    28   1.5  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    26   5.9  
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha...    26   5.9  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 24/84 (28%), Positives = 37/84 (44%)
 Frame = -3

Query: 530 STSLSNYSASLKSFLHSACDKLPCFSILLTSIKCFLASKATCICFCSNQEPFGTTSLRPM 351
           S+SL++ S +  S   S+       S  +TS    LAS +T     ++     TTS  P 
Sbjct: 116 SSSLASSSTTSSSLASSSITSSSLASSSITSSS--LASSSTTSSSLASSSTNSTTSATPT 173

Query: 350 MGSAPSVLVTPFATNSSPDRSFGS 279
             +  S L +  A+NS+   S  S
Sbjct: 174 SSATSSSLSSTAASNSATSSSLAS 197


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 531 YWQFYGHHQGKKLYLKPEEALFLMESNCLRLNNNGXTM 644
           Y QF GH       L  E  +F + S  LRL+N   T+
Sbjct: 53  YTQFIGHEGPVHQVLPQERGVFSLSSKSLRLSNRKGTI 90


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 391 EQKQIQVALEARKHLIEVNRIEKQ 462
           EQKQ+Q  +E RK+ ++ +R  K+
Sbjct: 146 EQKQLQTLMEKRKYSLDSDRKSKE 169


>SPBC30B4.08 |eri1||double-strand siRNA
           ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 533 VSTSLSNYSASLKSFLHSACDKLPCFSILLTSIKCFL 423
           ++ +LS+Y  SL        DK P FS +L  +  FL
Sbjct: 130 MNPTLSDYCKSLTGIQQCTVDKAPIFSDVLEELFIFL 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,740,894
Number of Sequences: 5004
Number of extensions: 55619
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)