Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120677.seq
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0721 + 19725695-19725697,19725793-19725859,19725944-197260...    30   1.5  
08_01_1010 - 10215625-10216335,10216372-10216473                       30   2.0  
12_01_0822 + 7592752-7593255                                           28   8.0  

>09_04_0721 +
           19725695-19725697,19725793-19725859,19725944-19726044,
           19726780-19726824,19727052-19727522,19727972-19728142
          Length = 285

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/52 (34%), Positives = 31/52 (59%)
 Frame = +3

Query: 57  MIMNELIIFYSKN*LKNFFYLLIEKCYKIIVGKMYFSSVTTYLKLKSEIIEL 212
           +++NE  I YS + L+N  YLL++KC +   G MY ++   Y+   S + +L
Sbjct: 208 LLVNE--IPYSASSLQNL-YLLVKKCLRPPYGVMYLAARKNYIGSSSAVRQL 256


>08_01_1010 - 10215625-10216335,10216372-10216473
          Length = 270

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 24/84 (28%), Positives = 36/84 (42%)
 Frame = -3

Query: 530 STSLSNYSASLKSFLHSACDKLPCFSILLTSIKCFLASKATCICFCSNQEPFGTTSLRPM 351
           ++S ++ SA+  SF  SA     C S  +  +      +    CFC    P G T   PM
Sbjct: 5   ASSCASCSAAADSFSSSASSCCCCGSSRIQELGVGSGGEG---CFCCASSP-GYTPSSPM 60

Query: 350 MGSAPSVLVTPFATNSSPDRSFGS 279
           +  +P    +P  T S+P R   S
Sbjct: 61  VMGSPRRAASPDYTPSTPPRRAAS 84


>12_01_0822 + 7592752-7593255
          Length = 167

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 304 ELVAKGVTRTEGALPIIGLKEVVPNGSWLEQKQIQVALE 420
           +L    V  TE A+ + G  EVV NG   +Q+ + +A E
Sbjct: 34  KLATTKVLSTEVAVQLAGTDEVVTNGKEQQQEPVSIAQE 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,917,882
Number of Sequences: 37544
Number of extensions: 302297
Number of successful extensions: 648
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)