Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120677.seq
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)                        29   4.7  
SB_24679| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1850

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 550  CP*NCQY-PPVCRITQQALNRFSIQHVIN 467
            CP  C+Y  PVC  T    NR+SI++  N
Sbjct: 1790 CPKKCKYCRPVCEDTSADCNRYSIENCDN 1818


>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2681

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 550 CP*NCQY-PPVCRITQQALNRFSIQHVIN 467
           CP  C+Y  PVC  T    NR+SI++  N
Sbjct: 114 CPKKCKYCRPVCEDTSADCNRYSIENCDN 142


>SB_24679| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 326 RELKVHCPSLASKKLYQMVLG*SKNKYKWLWK 421
           + LK+HC +L SK   Q V G    KYK + K
Sbjct: 205 KTLKLHCANLESKGKSQRVQGIDVKKYKKMLK 236


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,044,379
Number of Sequences: 59808
Number of extensions: 364541
Number of successful extensions: 743
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)