Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120677.seq
         (691 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-7|CAD27929.1|  555|Anopheles gambiae putative glycerol ...    25   1.7  
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    23   6.9  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    23   6.9  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    23   9.1  

>AJ439353-7|CAD27929.1|  555|Anopheles gambiae putative glycerol
           kinase protein.
          Length = 555

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 352 IGLKEVVPNGSWLEQKQIQVALEARKHLIEV-NRIEKQGSL 471
           I + ++VP   W E   ++V    R   +E  +++EK G L
Sbjct: 38  IRITQIVPRDGWTEHNPVEVLEAVRLCAVEACHQVEKLGFL 78


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 10  DRFIVFLFTCFAII 51
           DRF +F+FT F II
Sbjct: 462 DRFCLFVFTLFTII 475


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 10  DRFIVFLFTCFAII 51
           DRF +F+FT F II
Sbjct: 462 DRFCLFVFTLFTII 475


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 373 PNGS-WLEQKQIQVALEARKHLIEVNRIEKQGSLSHAEWR 489
           PN + WLE  ++  A++   ++ +  R E++ S    +W+
Sbjct: 611 PNRNRWLECPELTKAMDGVTYIADHTRKEEESSRVKEDWK 650


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 663,230
Number of Sequences: 2352
Number of extensions: 13245
Number of successful extensions: 29
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69831885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)