Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120677.seq
(691 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC053643-1|AAH53643.1| 527|Homo sapiens TSEN54 protein protein. 45 2e-04
BC047793-1|AAH47793.1| 526|Homo sapiens tRNA splicing endonucle... 45 2e-04
AK094466-1|BAC04362.1| 177|Homo sapiens protein ( Homo sapiens ... 45 2e-04
BC051768-1|AAH51768.1| 1327|Homo sapiens patatin-like phospholip... 31 5.1
BC050553-1|AAH50553.1| 1327|Homo sapiens patatin-like phospholip... 31 5.1
BC038229-1|AAH38229.1| 1332|Homo sapiens PNPLA6 protein protein. 31 5.1
AJ004832-1|CAA06164.1| 1327|Homo sapiens neuropathy target ester... 31 5.1
L25293-1|AAA19489.1| 129|Homo sapiens polyreactive immunoglobul... 30 8.9
>BC053643-1|AAH53643.1| 527|Homo sapiens TSEN54 protein protein.
Length = 527
Score = 45.2 bits (102), Expect = 2e-04
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +3
Query: 525 GGYWQFYGHHQGKKLYLKPEEALFLMESNCLRLNNNGXTMSLQEAYSILLNE 680
G +WQ G + + L PEEAL+L+E + L + +S+QEAY +LL +
Sbjct: 97 GKFWQTMGFSEQGRQRLHPEEALYLLECGSIHLFHQDLPLSIQEAYQLLLTD 148
Score = 36.7 bits (81), Expect = 0.078
Identities = 22/72 (30%), Positives = 37/72 (51%)
Frame = +1
Query: 274 MPDPKLLSGEELVAKGVTRTEGALPIIGLKEVVPNGSWLEQKQIQVALEARKHLIEVNRI 453
+P ++LS EL A + G K+ +P+GS + ++++ E L+ R+
Sbjct: 13 VPAGRVLSARELFAARSRSQKLPQRSHGPKDFLPDGSAAQAERLRRCREELWQLLAEQRV 72
Query: 454 EKQGSLSHAEWR 489
E+ GSL AEWR
Sbjct: 73 ERLGSLVAAEWR 84
>BC047793-1|AAH47793.1| 526|Homo sapiens tRNA splicing endonuclease
54 homolog (S. cerevisiae) protein.
Length = 526
Score = 45.2 bits (102), Expect = 2e-04
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +3
Query: 525 GGYWQFYGHHQGKKLYLKPEEALFLMESNCLRLNNNGXTMSLQEAYSILLNE 680
G +WQ G + + L PEEAL+L+E + L + +S+QEAY +LL +
Sbjct: 96 GKFWQTMGFSEQGRQRLHPEEALYLLECGSIHLFHQDLPLSIQEAYQLLLTD 147
Score = 36.7 bits (81), Expect = 0.078
Identities = 22/72 (30%), Positives = 37/72 (51%)
Frame = +1
Query: 274 MPDPKLLSGEELVAKGVTRTEGALPIIGLKEVVPNGSWLEQKQIQVALEARKHLIEVNRI 453
+P ++LS EL A + G K+ +P+GS + ++++ E L+ R+
Sbjct: 12 VPAGRVLSARELFAARSRSQKLPQRSHGPKDFLPDGSAAQAERLRRCREELWQLLAEQRV 71
Query: 454 EKQGSLSHAEWR 489
E+ GSL AEWR
Sbjct: 72 ERLGSLVAAEWR 83
>AK094466-1|BAC04362.1| 177|Homo sapiens protein ( Homo sapiens
cDNA FLJ37147 fis, clone BRACE2025316, weakly similar to
tRNA-splicing endonuclease subunit. ).
Length = 177
Score = 45.2 bits (102), Expect = 2e-04
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +3
Query: 525 GGYWQFYGHHQGKKLYLKPEEALFLMESNCLRLNNNGXTMSLQEAYSILLNE 680
G +WQ G + + L PEEAL+L+E + L + +S+QEAY +LL +
Sbjct: 96 GKFWQTMGFSEQGRQRLHPEEALYLLECGSIHLFHQDLPLSIQEAYQLLLTD 147
Score = 36.7 bits (81), Expect = 0.078
Identities = 22/72 (30%), Positives = 37/72 (51%)
Frame = +1
Query: 274 MPDPKLLSGEELVAKGVTRTEGALPIIGLKEVVPNGSWLEQKQIQVALEARKHLIEVNRI 453
+P ++LS EL A + G K+ +P+GS + ++++ E L+ R+
Sbjct: 12 VPAGRVLSARELFAARSRSQKLPQRSHGPKDFLPDGSAAQAERLRRCREELWQLLAEQRV 71
Query: 454 EKQGSLSHAEWR 489
E+ GSL AEWR
Sbjct: 72 ERLGSLVAAEWR 83
>BC051768-1|AAH51768.1| 1327|Homo sapiens patatin-like phospholipase
domain containing 6 protein.
Length = 1327
Score = 30.7 bits (66), Expect = 5.1
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +1
Query: 328 RTEGALPIIGLKEVVPNGSWLEQKQIQVALEARKHLIEVNRIEKQGSLSHAEWRN 492
R + I+GL + P LEQ A+ A K L+ ++R E G EW N
Sbjct: 821 RQADCILIVGLGDQEPTLGQLEQMLENTAVRALKQLVLLHREEGAGPTRTVEWLN 875
>BC050553-1|AAH50553.1| 1327|Homo sapiens patatin-like phospholipase
domain containing 6 protein.
Length = 1327
Score = 30.7 bits (66), Expect = 5.1
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +1
Query: 328 RTEGALPIIGLKEVVPNGSWLEQKQIQVALEARKHLIEVNRIEKQGSLSHAEWRN 492
R + I+GL + P LEQ A+ A K L+ ++R E G EW N
Sbjct: 821 RQADCILIVGLGDQEPTLGQLEQMLENTAVRALKQLVLLHREEGAGPTRTVEWLN 875
>BC038229-1|AAH38229.1| 1332|Homo sapiens PNPLA6 protein protein.
Length = 1332
Score = 30.7 bits (66), Expect = 5.1
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +1
Query: 328 RTEGALPIIGLKEVVPNGSWLEQKQIQVALEARKHLIEVNRIEKQGSLSHAEWRN 492
R + I+GL + P LEQ A+ A K L+ ++R E G EW N
Sbjct: 826 RQADCILIVGLGDQEPTLGQLEQMLENTAVRALKQLVLLHREEGAGPTRTVEWLN 880
>AJ004832-1|CAA06164.1| 1327|Homo sapiens neuropathy target esterase
protein.
Length = 1327
Score = 30.7 bits (66), Expect = 5.1
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +1
Query: 328 RTEGALPIIGLKEVVPNGSWLEQKQIQVALEARKHLIEVNRIEKQGSLSHAEWRN 492
R + I+GL + P LEQ A+ A K L+ ++R E G EW N
Sbjct: 821 RQADCILIVGLGDQEPTLGQLEQMLENTAVRALKQLVLLHREEGAGPTRTVEWLN 875
>L25293-1|AAA19489.1| 129|Homo sapiens polyreactive immunoglobulin
mu-chain variable region protein.
Length = 129
Score = 29.9 bits (64), Expect = 8.9
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -3
Query: 518 SNYSASLKSFLHSACDKLPC-FSILLTSIKCFLASKATCICFCSNQEPFGTTSLRPMMGS 342
+NY+ SLKS + + D FS+ L+S+ + T + +C+ + FGT S P+
Sbjct: 57 TNYNPSLKSRVTISVDTSKNQFSLRLSSV----TAADTAVYYCARSKTFGTGSYSPLRRG 112
Query: 341 AP 336
P
Sbjct: 113 PP 114
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,279,409
Number of Sequences: 237096
Number of extensions: 1779133
Number of successful extensions: 3159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3159
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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