Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120677.seq
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100657-3|AAC68961.1|  335|Caenorhabditis elegans Hypothetical ...    31   0.59 
AF025469-1|AAG00030.3|  578|Caenorhabditis elegans Hypothetical ...    28   7.2  

>AF100657-3|AAC68961.1|  335|Caenorhabditis elegans Hypothetical
           protein F52C12.3 protein.
          Length = 335

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
 Frame = +3

Query: 510 VIRQTGGYWQFYGHHQGKKLY-LKPEEALFLMESNCLRLN-NNGXTMSLQEAYSIL 671
           V + TG + +  G   GK  Y + PEEA++LME+    ++ ++G  +SL EA+SIL
Sbjct: 29  VTKVTGKHLESMGI-PGKFGYEVYPEEAVYLMETGSATISTSSGRDLSLLEAFSIL 83


>AF025469-1|AAG00030.3|  578|Caenorhabditis elegans Hypothetical
           protein W09B6.3 protein.
          Length = 578

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 428 FLASKATCICFCSNQEPFGTTSL 360
           F+ SKATCI + SN +P G  S+
Sbjct: 66  FIFSKATCIQYPSNFDPIGVGSV 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,892,653
Number of Sequences: 27780
Number of extensions: 305835
Number of successful extensions: 587
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)