Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120676.seq
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0772 + 25056973-25057285,25057678-25058006,25058113-250583... 39 0.003
02_05_1233 - 35112629-35112844,35112922-35112987,35113222-351132... 34 0.092
01_05_0770 - 25052100-25052525,25052718-25053042,25053220-250534... 34 0.092
07_03_1404 + 26329179-26329455,26329602-26330878 34 0.12
01_05_0773 + 25062364-25062894,25063000-25063244,25063365-250637... 33 0.16
07_03_0088 + 13270463-13270745,13271113-13271584,13271680-13272484 33 0.21
01_04_0121 - 16307839-16308315,16308394-16308793,16308978-163094... 33 0.21
01_06_0576 - 30365903-30366328,30367262-30367640,30368215-303684... 32 0.49
01_05_0768 + 25036945-25037296,25037499-25037722,25037902-250379... 31 0.86
06_03_0494 - 21407798-21408142,21408238-21408333,21408854-214096... 31 1.1
01_05_0777 + 25110356-25110662,25112569-25112789,25112880-251131... 31 1.1
01_05_0615 - 23678493-23678948,23679057-23679441,23680250-236805... 31 1.1
08_02_0748 - 20754293-20755136,20755686-20755927,20756012-207562... 30 1.5
01_05_0776 + 25072541-25073080,25073174-25073418,25073558-250739... 30 1.5
07_03_1403 + 26322172-26322257,26322279-26322448,26322544-263238... 29 3.5
11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467 29 4.6
02_02_0278 + 8500983-8501253,8501343-8501558,8501704-8501855,850... 28 6.0
06_01_0640 - 4644576-4645007,4645090-4646163,4646196-4646258 28 8.0
>01_05_0772 +
25056973-25057285,25057678-25058006,25058113-25058360,
25058481-25059396
Length = 601
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = +1
Query: 475 AKFKGLRMERRCSTLTPAFSSSRLKNMIPLIQQCSKQMVE----FLKKFDGK-EIEMKQT 639
A ++G + R L PAF +LK+M+P C +M++ L DG E+++ Q
Sbjct: 190 ASYEGEKWARHRRILNPAFHLEKLKHMLPAFSTCCSEMIDRWDSKLAGSDGPFELDIWQE 249
Query: 640 MGHFTLEVIGACAFG 684
+ T +VI AFG
Sbjct: 250 FQNLTGDVISRTAFG 264
Score = 32.7 bits (71), Expect = 0.28
Identities = 18/54 (33%), Positives = 32/54 (59%)
Frame = +2
Query: 338 TFDGRRPVLHILDPELIKAIMIRDFDHFTDRNTLNSMEPRYLSRSLLNLKGLEW 499
T+ G P + I +PEL+K I+ F HF ++ TL S+ + ++ L + +G +W
Sbjct: 146 TWFGTTPRVVIAEPELVKDILSNKFGHF-EKFTLKSL-GKLIALGLASYEGEKW 197
>02_05_1233 -
35112629-35112844,35112922-35112987,35113222-35113282,
35115319-35115401,35115483-35115563,35115661-35115693,
35115841-35115942,35116023-35116118,35116205-35116366,
35116469-35116660,35116742-35116852,35116940-35117011,
35117111-35117324,35117422-35117699
Length = 588
Score = 34.3 bits (75), Expect = 0.092
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +1
Query: 493 RMERRCSTLTPAFSSSRLKNMIPLIQQCSKQMVEFLKKF--DGKEIEMKQTMGHFTLEVI 666
R+ RR + PA + MI L S ++ + L K DG+++EM+ TL+VI
Sbjct: 212 RVRRRA--IVPAMHQKYVTAMISLFGYASDRLCQKLDKAATDGEDVEMESLFSRLTLDVI 269
Query: 667 GACAF 681
G F
Sbjct: 270 GKAVF 274
>01_05_0770 -
25052100-25052525,25052718-25053042,25053220-25053464,
25053582-25054061
Length = 491
Score = 34.3 bits (75), Expect = 0.092
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Frame = +1
Query: 475 AKFKGLRMERRCSTLTPAFSSSRLKNMIPLIQQCSKQMV----EFLKKFDGKEIEMKQTM 642
A ++G + + L PAF +LK M+P C +++V L EI++ M
Sbjct: 136 ANYEGEKWAKHRRILNPAFHLEKLKLMLPAFSACCEELVGRWAASLGSDGSNEIDVWPEM 195
Query: 643 GHFTLEVIGACAFG 684
T +VI AFG
Sbjct: 196 QSLTGDVISRTAFG 209
>07_03_1404 + 26329179-26329455,26329602-26330878
Length = 517
Score = 33.9 bits (74), Expect = 0.12
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +1
Query: 487 GLRMERRCSTLTPAFSSSRLKNMIPLIQQCSKQMV-----EFLKKFDGKEIEMKQTMGHF 651
G +R + PAF+ +LK M + C++ M+ E K D EIE+ +
Sbjct: 147 GDEWKRHRKVVHPAFNMDKLKMMTVTMSDCAQSMISEWESELGTKGDIVEIELSRRFEEL 206
Query: 652 TLEVIGACAFG 684
T +VI AFG
Sbjct: 207 TADVISHTAFG 217
>01_05_0773 +
25062364-25062894,25063000-25063244,25063365-25063749,
25063857-25064282
Length = 528
Score = 33.5 bits (73), Expect = 0.16
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = +1
Query: 451 TTISESVFAKFKGLRMERRCSTLTPAFSSSRLKNMIPLIQQCSKQMV----EFLKKFDGK 618
T + A +G + + L PAF +LK M+P C +++V E L
Sbjct: 145 TKLFSDSLANHEGEKWVKHRRILNPAFHLEKLKLMLPAFSACCEELVSKWMESLGSDGSY 204
Query: 619 EIEMKQTMGHFTLEVIGACAFG 684
E+++ M T +VI AFG
Sbjct: 205 EVDVWPEMQILTGDVISRTAFG 226
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +2
Query: 338 TFDGRRPVLHILDPELIKAIMIRDFDHFTDRNTLNSMEPRYLSRSLLNLKGLEW 499
T+ G P + I DP+L K ++ F HF ++ ++ + S SL N +G +W
Sbjct: 109 TWFGPTPKVTITDPDLAKGVLSNKFGHF-EKPKFPTL-TKLFSDSLANHEGEKW 160
>07_03_0088 + 13270463-13270745,13271113-13271584,13271680-13272484
Length = 519
Score = 33.1 bits (72), Expect = 0.21
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +1
Query: 487 GLRMERRCSTLTPAFSSSRLKNMIPLIQQCSKQMV-----EFLKKFDGKEIEMKQTMGHF 651
G +R + PAF+ +LK M + CS+ M+ E K EIE+ +
Sbjct: 149 GDEWKRHRKVVHPAFNMDKLKMMTMTMSDCSRSMMSEWESELAAKGGLVEIELSRRFEEL 208
Query: 652 TLEVIGACAFG 684
T +VI AFG
Sbjct: 209 TADVISHTAFG 219
>01_04_0121 -
16307839-16308315,16308394-16308793,16308978-16309452,
16309936-16310353
Length = 589
Score = 33.1 bits (72), Expect = 0.21
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +2
Query: 347 GRRPVLHILDPELIKAIMIRDFDHFTDRNTLNSMEPRYLSRSLLNLKGLEW 499
G P L I DPELI+ +++ D F DR + M + L++L+G +W
Sbjct: 148 GPTPRLAIADPELIREVLLARADRF-DRYESHPMVRQLEGEGLVSLRGDKW 197
>01_06_0576 -
30365903-30366328,30367262-30367640,30368215-30368459,
30368819-30369039,30369786-30370074
Length = 519
Score = 31.9 bits (69), Expect = 0.49
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +1
Query: 481 FKGLRMERRCSTLTPAFSSSRLKNMIPL-IQQCSKQMVEFLKKFDGK---EIEMKQTMGH 648
++G + + L PAF ++K M+P+ + C+K + ++ + E+++ +
Sbjct: 148 YEGEKWAKHRRILNPAFHQEKIKRMLPVFLACCTKMITRWVNSMSSEGISELDVWDEFQN 207
Query: 649 FTLEVIGACAFG 684
T +VI AFG
Sbjct: 208 LTGDVISRTAFG 219
>01_05_0768 +
25036945-25037296,25037499-25037722,25037902-25037955,
25038006-25038253,25038909-25039296,25039392-25039802,
25039919-25040077,25040632-25040979
Length = 727
Score = 31.1 bits (67), Expect = 0.86
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +2
Query: 338 TFDGRRPVLHILDPELIKAIMIRDFDHFTDRNTLNSMEPRYLSRSLLNLKGLEW 499
T+ G P + I DP+L++ ++ F HF ++ L + + L L+ L G +W
Sbjct: 123 TWFGPMPRVTITDPDLVREVLSNKFGHF-EKTKLATRLSKLLVGGLVILHGEKW 175
>06_03_0494 -
21407798-21408142,21408238-21408333,21408854-21409670,
21410211-21410363,21410506-21410744
Length = 549
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/59 (20%), Positives = 27/59 (45%)
Frame = +1
Query: 511 STLTPAFSSSRLKNMIPLIQQCSKQMVEFLKKFDGKEIEMKQTMGHFTLEVIGACAFGI 687
+T+ + S L +IP + C + + + + ++++ +VIG AFG+
Sbjct: 149 NTIISLYQPSHLAGLIPTMHSCVARAADAIAAAEQRDVDFSDLSLKLATDVIGQAAFGV 207
>01_05_0777 +
25110356-25110662,25112569-25112789,25112880-25113127,
25113274-25113664,25113751-25114155,25115260-25115366,
25115833-25116170,25116206-25116486,25116645-25116889,
25116998-25117382,25117459-25117884
Length = 1117
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +1
Query: 484 KGLRMERRCSTLTPAFSSSRLKNMIPLIQQCSKQMV---EFLKKFDGK--EIEMKQTMGH 648
+G + + + PAF +LK M+P C ++V E L K + E+++ M
Sbjct: 155 EGEKWAKHRRIINPAFHLEKLKRMLPAFAACCTELVDKWEGLAKGGDEPYEVDVWPEMQS 214
Query: 649 FTLEVIGACAFG 684
T +VI AFG
Sbjct: 215 LTGDVISRAAFG 226
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +1
Query: 526 AFSSSRLKNMIPLIQQCSKQMVEFLKKFDG----KEIEMKQTMGHFTLEVIGACAFG 684
AF +LK M+P CS +++ + G +EI++ + T +VI AFG
Sbjct: 759 AFHLEKLKRMLPAFAACSSELISRWQDSVGADGAQEIDVWPEFQNLTGDVISRSAFG 815
>01_05_0615 -
23678493-23678948,23679057-23679441,23680250-23680545,
23680983-23681504
Length = 552
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 338 TFDGRRPVLHILDPELIKAIMIRDFDHF 421
T+ G P +H+ DPEL + ++ F HF
Sbjct: 106 TWFGPTPEVHVADPELARVVLSNKFGHF 133
>08_02_0748 -
20754293-20755136,20755686-20755927,20756012-20756241,
20756324-20756612
Length = 534
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +1
Query: 517 LTPAFSSSRLKNMIPLIQQCSKQMVEFLKKF---DGKEIEMKQTMGHFTLEVIGACAF 681
+ PAF + RLK + + +C++Q V L+ G E+E+ M +VI F
Sbjct: 163 VAPAFMADRLKGRVGHMVECTRQTVRALRDAVARSGNEVEIGAHMARLAGDVIARTEF 220
>01_05_0776 +
25072541-25073080,25073174-25073418,25073558-25073942,
25074058-25074483
Length = 531
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +1
Query: 517 LTPAFSSSRLKNMIPLIQQCSKQMV-EFLKKF--DGK-EIEMKQTMGHFTLEVIGACAFG 684
+ PAF +LK M+P C +++V +++ DG E+++ M T +VI AFG
Sbjct: 170 MNPAFHLEKLKLMLPAFSTCCEELVGKWMDSLGPDGSCELDVWPEMQSLTGDVISRTAFG 229
>07_03_1403 +
26322172-26322257,26322279-26322448,26322544-26323814,
26323962-26324006
Length = 523
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Frame = +1
Query: 499 ERRCSTLTPAFSSSRLKNMIPLIQQCSKQMV-----EFLKKFDGKEIEMKQTMGHFTLEV 663
+R + PAF +LK M I ++ M+ E K EIE+ + T +V
Sbjct: 144 KRHYKVVHPAFDMDKLKMMTETISDYAQSMMFEWESELGMKGGSTEIELSRWFEELTADV 203
Query: 664 IGACAFG 684
I AFG
Sbjct: 204 ISRTAFG 210
>11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467
Length = 976
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 654 CEMTHCLFHFNFFPIKFLEKFDHLLRTLLYE 562
C + CL + + FP F+ DHL+R + E
Sbjct: 428 CHLKTCLLYLSIFPEDFIISRDHLVRMWIAE 458
>02_02_0278 +
8500983-8501253,8501343-8501558,8501704-8501855,
8501949-8502222,8503569-8503754,8503939-8503976
Length = 378
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +2
Query: 293 QLDIYQYFKGHPYGGTFDGRRPVLHILD 376
QL Q F GHP G DGR V H+ D
Sbjct: 65 QLPYGQTFPGHPTGRCSDGRLVVDHLAD 92
>06_01_0640 - 4644576-4645007,4645090-4646163,4646196-4646258
Length = 522
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Frame = +1
Query: 523 PAFSSSRLKNMIPLIQQCSKQMV---EFLKKFDGK---EIEMKQTMGHFTLEVIGACAFG 684
PAF+ +LK M + C+++++ E DG+ ++E+ + T +VI AFG
Sbjct: 154 PAFAMDKLKMMAKTMADCAREVIREWEARATADGERRVQVEVGGQLQELTADVISHTAFG 213
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,319,143
Number of Sequences: 37544
Number of extensions: 284304
Number of successful extensions: 633
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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