Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120672.seq
         (685 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P12828 Cluster: Early 40.9 kDa protein; n=5; Nucleopoly...   172   8e-42
UniRef50_O10278 Cluster: Putative early 40.3 kDa protein; n=8; N...    91   2e-17
UniRef50_A2EH30 Cluster: Putative uncharacterized protein; n=1; ...    36   1.2  
UniRef50_Q62J76 Cluster: ABC transporter, periplasmic substrate-...    33   8.6  
UniRef50_Q6C768 Cluster: Similar to DEHA0A13277g Debaryomyces ha...    33   8.6  

>UniRef50_P12828 Cluster: Early 40.9 kDa protein; n=5;
           Nucleopolyhedrovirus|Rep: Early 40.9 kDa protein -
           Autographa californica nuclear polyhedrosis virus
           (AcMNPV)
          Length = 353

 Score =  172 bits (418), Expect = 8e-42
 Identities = 84/130 (64%), Positives = 95/130 (73%)
 Frame = +3

Query: 255 DYKSALKCIDFDYYGLCSKKMFCNLQTNLQKCVDQHYAELDVLTRQIYMSNPLVMLKCYQ 434
           D +SALKCIDFDYYG C+K MFCNLQTNLQKCVDQHYAELDVLTRQ+YMS+PLV+LKCYQ
Sbjct: 67  DDRSALKCIDFDYYGFCAK-MFCNLQTNLQKCVDQHYAELDVLTRQVYMSDPLVVLKCYQ 125

Query: 435 NGAYRLNGQIDLHLNRHIKCIKTQ*TMSLIWLDLHYKLI*QAHTASTSIPTTALK*PQPR 614
           NGAYRLNGQI+LHLNRHIKCIKTQ       +    ++   +           +K     
Sbjct: 126 NGAYRLNGQINLHLNRHIKCIKTQYNDEFDLVRFALQIDITSADGVDEYTDNGVKITTAP 185

Query: 615 CXFNVFFVNV 644
             FNVFFVNV
Sbjct: 186 LSFNVFFVNV 195



 Score =  143 bits (347), Expect = 3e-33
 Identities = 67/68 (98%), Positives = 68/68 (100%)
 Frame = +1

Query: 52  MERLLNQLNLGVLPYITTKDIEDRLRDKIVAKAKLAFIKDCFEAVVCENGGLFVLTGGAA 231
           MERLLNQLNLGVLPYITTKDIEDRLRDKIVAKAKLAFIKDCFEAVVCENGGLFVLTGGAA
Sbjct: 1   MERLLNQLNLGVLPYITTKDIEDRLRDKIVAKAKLAFIKDCFEAVVCENGGLFVLTGGAA 60

Query: 232 VTCHIDDE 255
           VTCHIDD+
Sbjct: 61  VTCHIDDD 68



 Score = 33.1 bits (72), Expect = 6.5
 Identities = 14/18 (77%), Positives = 14/18 (77%)
 Frame = +1

Query: 631 FLSTWRIMKRPFNADRCI 684
           F    RIMKRPFNADRCI
Sbjct: 191 FFVNVRIMKRPFNADRCI 208


>UniRef50_O10278 Cluster: Putative early 40.3 kDa protein; n=8;
           Nucleopolyhedrovirus|Rep: Putative early 40.3 kDa
           protein - Orgyia pseudotsugata multicapsid polyhedrosis
           virus (OpMNPV)
          Length = 355

 Score = 91.5 bits (217), Expect = 2e-17
 Identities = 41/68 (60%), Positives = 51/68 (75%)
 Frame = +1

Query: 52  MERLLNQLNLGVLPYITTKDIEDRLRDKIVAKAKLAFIKDCFEAVVCENGGLFVLTGGAA 231
           M+R+ +Q+  G LPYITT D+EDRLR++I AKA   F K CFEAVV +  GLFVL+GGAA
Sbjct: 1   MDRVASQIYSGALPYITTMDMEDRLRNRIAAKAGAKFFKACFEAVVADKSGLFVLSGGAA 60

Query: 232 VTCHIDDE 255
             CHI D+
Sbjct: 61  TACHIGDD 68



 Score = 65.7 bits (153), Expect = 1e-09
 Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
 Frame = +3

Query: 255 DYKSALKCIDFDYYGLCSKKM-FCNLQTNLQKCVDQHYAELDVLTRQIYMSNPLVMLKCY 431
           D ++ LKC+DFDYY    + +    LQ  LQ CV  +   L  L + + M + L ++KC+
Sbjct: 67  DDRNVLKCLDFDYYNATQEWLQLARLQQRLQACVQDNLEILSRLAQSVRMQDDLFVVKCF 126

Query: 432 QNGAYRLNGQIDLHLNRHIKCIKTQ*TMSLIWLDLHYKLI*QAHTASTSIPTTALK*PQP 611
           QNGA+  NG +   L   ++ ++T        L    ++  +A           +   + 
Sbjct: 127 QNGAFCFNGPVQARLVPCVETVRTSFNGEFDLLRFALQVELKALNGVDEYVDQKVIVDRG 186

Query: 612 RCXFNVFFVNV 644
              FNVFFVN+
Sbjct: 187 AAVFNVFFVNI 197


>UniRef50_A2EH30 Cluster: Putative uncharacterized protein; n=1;
            Trichomonas vaginalis G3|Rep: Putative uncharacterized
            protein - Trichomonas vaginalis G3
          Length = 977

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 20/71 (28%), Positives = 34/71 (47%)
 Frame = +2

Query: 416  NAEMLSKRSL*TKRSNRFALKPPYKMHKNTVNDEFDLVRFALQIDITSAYGVDEYTDNCV 595
            NAE+L    L  K+ NR+   P +   K ++N+  +++R    ID+  A G +    +  
Sbjct: 834  NAELLLSAGLSPKKKNRWLRSPMFNAFKGSMNEPINILRSLTMIDLLIAKGGNVNETDSR 893

Query: 596  KITTAPLXFQR 628
              T A   F+R
Sbjct: 894  NSTPAIALFER 904


>UniRef50_Q62J76 Cluster: ABC transporter, periplasmic
           substrate-binding protein; n=57; Burkholderiales|Rep:
           ABC transporter, periplasmic substrate-binding protein -
           Burkholderia mallei (Pseudomonas mallei)
          Length = 650

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 477 LSANRFDRLVYRLRFDNISALPTDLTCKFDALTRPIQRNVGRR 349
           +  N F+R+VY+L  D ++ L      ++D L   I RN  RR
Sbjct: 289 IGTNNFERIVYKLYGDGVARLEAFKAGEYDVLVEYIARNWARR 331


>UniRef50_Q6C768 Cluster: Similar to DEHA0A13277g Debaryomyces
           hansenii; n=1; Yarrowia lipolytica|Rep: Similar to
           DEHA0A13277g Debaryomyces hansenii - Yarrowia lipolytica
           (Candida lipolytica)
          Length = 152

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 474 SANR-FDRLVYRLRFDNISALPTDLTCKFDALTRPIQRNVGRRI 346
           + NR F R+ Y   FD +  LPT L C F     P  + V  R+
Sbjct: 31  TGNRVFFRIRYSQEFDQLKTLPTPLLCNFYIRNDPFSKTVSERL 74


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 600,241,984
Number of Sequences: 1657284
Number of extensions: 10842987
Number of successful extensions: 27090
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27078
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)