Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120672.seq
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0727 - 10742899-10744375,10744470-10744933,10745412-10745477     29   2.6  
07_01_0889 + 7426680-7427396,7428073-7428222,7429296-7429601           28   7.9  
03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,446...    28   7.9  

>03_02_0727 - 10742899-10744375,10744470-10744933,10745412-10745477
          Length = 668

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -2

Query: 603 VILTQLSVYSSTPYALVISICSANLTKSNSSFTV 502
           V L++ S  SS+P A V  I S N TKS S+F +
Sbjct: 214 VCLSEDSFSSSSPAAAVAPIPSGNTTKSGSAFII 247


>07_01_0889 + 7426680-7427396,7428073-7428222,7429296-7429601
          Length = 390

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 31  SSSPLFIMERLLNQLNLGVLPYITTKDI--EDRLRDKIVAKAKL 156
           SS    ++E +LN +  G+L Y+   D+  ED +  ++ +K KL
Sbjct: 325 SSPTALVVEGILNSVAAGILIYMALVDLLAEDFMNPRVQSKGKL 368


>03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,
            4469273-4469314,4469496-4469572,4469671-4469755,
            4469818-4469901,4469988-4470089,4470181-4470279,
            4470794-4470919
          Length = 1193

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 260  VVSSSIWHVTAAPPVNTNKPPFSQTTASKQSLINA 156
            VV +S  H+ +  PVN N P ++ T A  + ++ +
Sbjct: 1152 VVLASTDHINSCKPVNKNDPSYADTLAFLEKILKS 1186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,011,985
Number of Sequences: 37544
Number of extensions: 299480
Number of successful extensions: 715
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)