Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120672.seq
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67310.1 68418.m08488 cytochrome P450 family protein                30   1.6  
At2g29000.1 68415.m03527 leucine-rich repeat family protein / pr...    29   2.9  
At1g03560.1 68414.m00337 pentatricopeptide (PPR) repeat-containi...    29   3.8  

>At5g67310.1 68418.m08488 cytochrome P450 family protein
          Length = 507

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 255 DYKSALKCIDFDYYGLCSKKMFCNLQTNLQKCVDQH 362
           D+   LK  D D Y   +KK+   L   +QK VD+H
Sbjct: 233 DFLPTLKLFDLDGYRKRAKKLASKLDKFMQKLVDEH 268


>At2g29000.1 68415.m03527 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 872

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 23/71 (32%), Positives = 33/71 (46%)
 Frame = -2

Query: 600 ILTQLSVYSSTPYALVISICSANLTKSNSSFTVFLCILYGGLSANRFDRLVYRLRFDNIS 421
           + T LSV S+ P+ L   I  +  T  NSS  +   + YGG S+   D++   L F  I 
Sbjct: 225 VKTALSVNSTNPFELPQVIIRSAATPVNSSEPI--TVEYGGYSSG--DQVYLYLHFAEIQ 280

Query: 420 ALPTDLTCKFD 388
            L      +FD
Sbjct: 281 TLKASDNREFD 291


>At1g03560.1 68414.m00337 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 660

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -1

Query: 622 KXQRGCGYFN--AVVGILVDAVCACYINL*CKSNQIK 518
           K  R C   +  A +G+++DA C   IN  CK+ +IK
Sbjct: 553 KVARACKILDELAPMGVILDAACEDMINTLCKAGRIK 589


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,152,927
Number of Sequences: 28952
Number of extensions: 248450
Number of successful extensions: 604
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)