Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120667.seq
(694 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 27 1.9
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 27 2.6
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 27 2.6
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 27 3.4
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 27 3.4
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 27 3.4
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual 27 3.4
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 4.5
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 26 4.5
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 26 5.9
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 5.9
SPBC83.04 |apc15||anaphase-promoting complex subunit Apc15 |Schi... 25 7.9
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 25 7.9
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe... 25 7.9
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 247 TLGPMVYVVLPLAGSNTTIFLSGSGY 170
T+ V VVLP AG+NT +SGS +
Sbjct: 290 TVSGTVEVVLPTAGTNTMTVVSGSRF 315
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 247 TLGPMVYVVLPLAGSNTTIFLSGSGY 170
T+ V VVLP AG+NT +SGS +
Sbjct: 430 TVSGTVEVVLPTAGTNTMTVVSGSRF 455
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -2
Query: 627 FRRSVYFVHFEQSIKIFNAHSLHIKRN-VSDFSGGV 523
+RR F +F K+F + LH R V FS GV
Sbjct: 323 YRRGSIFQYFPSLSKLFRYYGLHSTRTYVEQFSNGV 358
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +2
Query: 191 YRGVGAG---QRQDYVHHRSKSAGQPCGFWFSDFGTIKRAKSTT 313
+RGVG+G Q+Q + S QP G +FG ++ K T
Sbjct: 385 FRGVGSGADLQKQQWNKSTSAEGLQPNGLVMRNFGDVRHQKLPT 428
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 320 WPKLCFWHVLWFQSRKTKIRRAALHSWTDGVRSLAVG 210
W ++CF + ++ K IRRAA++ T G S A+G
Sbjct: 939 WMRICFELIDMLKAHKKSIRRAAVN--TFGYISKAIG 973
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 202 NTTIFLSGSGYNLSSHSCKLFKLASRQNSF 113
NT ++ +G G ++ +H +LFK R F
Sbjct: 290 NTHLYANGEGQHIKNHLLELFKKLHRTQDF 319
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 232 VYVVLPLAGSNTTIFLSGSGYNLSS 158
V VV+P AG TT SGS Y +S+
Sbjct: 173 VEVVIPTAGYITTTLTSGSSYPVST 197
>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 232 VYVVLPLAGSNTTIFLSGSGYNLSS 158
V VV+P AG+ TT SGS Y +++
Sbjct: 130 VEVVIPTAGTFTTTLTSGSSYPVAT 154
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -2
Query: 456 FVLIRQMNAHVWFHFQRKIALQVSLQ-NVAKYIVVF 352
FVL+RQM + H QR L +++Q + YI +F
Sbjct: 318 FVLLRQMRINSPSHVQRLSFLTIAMQAGLDAYIAIF 353
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = +1
Query: 289 HKTCQKHNFGXFXSXQXGDIHKHNNIFGNILQRHLQSDFPLKMEPNVCIHLPDKNKTSE 465
+ C F S + +HK F +L+RHL D K ++C P K T++
Sbjct: 192 YSQCLNKQLDHFFSYKVTTVHKSYQRFATLLRRHL-LDKTAKRYHDLCEKRPYKYITTD 249
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 25.8 bits (54), Expect = 5.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 259 LRILVFRLWNHKTCQKH 309
L IL+ +LWNHK + H
Sbjct: 221 LAILIRKLWNHKAFKSH 237
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 169 NLSSHSCKLFKLASRQNSFFKNLPSKQLQFSIEK 68
N + C+ + +NSFFKNL S +SI K
Sbjct: 1202 NTVKYLCEYDSIDKVRNSFFKNLNSFYEMYSIAK 1235
>SPBC83.04 |apc15||anaphase-promoting complex subunit Apc15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +1
Query: 541 RNVPLDMQRMSVEDFDRLFEMDKIDGPSEEIKMYMMGTID 660
++ LD + + F EMD +DG +EE++ + + +D
Sbjct: 73 QDTELDEEELGSGSFPEEGEMDDMDGDNEEVEDHDIEEVD 112
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 7.9
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 13/89 (14%)
Frame = +1
Query: 409 LKMEPNVCIHLPDKNKTSEREHVDSSV-LHNQPRHNGSIYATGK------------IRNV 549
L+ + N L +KN + + +++ L+N + NG+ Y T K + +V
Sbjct: 57 LREKTNSGAKLAEKNSDDKDQLTENNDNLYNDKKSNGNFYDTNKTDSVDGMVYTTIVDSV 116
Query: 550 PLDMQRMSVEDFDRLFEMDKIDGPSEEIK 636
LD +E F +F K DG ++ +
Sbjct: 117 ELDPNDPLIEQFKDVFNRFKADGQEKDFE 145
>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 319
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 427 VCIHLPDKNKTSEREHVDS 483
+C H+P KNK REH+++
Sbjct: 149 LCCHVPCKNKKLLREHMNN 167
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,107,562
Number of Sequences: 5004
Number of extensions: 68860
Number of successful extensions: 215
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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