Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120667.seq
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.072
SB_30310| Best HMM Match : Y_phosphatase (HMM E-Value=0)               32   0.51 
SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25)                  31   0.67 
SB_47365| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_25791| Best HMM Match : GASA (HMM E-Value=9.9)                      31   0.89 
SB_15835| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_7214| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_22062| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)                       28   6.2  
SB_13700| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_34041| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 34.7 bits (76), Expect = 0.072
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
 Frame = -1

Query: 385 FAKCCQIYCCVCECL--RIXCSKXGQSCAFGTFYGSKVGKPKSAGLPCTLGPMVYVVLPL 212
           + +C   YC    C    +  S    SC++ TFY + +G  KS G P   G MVY+    
Sbjct: 86  YMRCTTSYCYRDSCPGDTVFKSNKWSSCSYDTFYINAIG--KSDGQPINSGDMVYISSGY 143

Query: 211 AGSNTTIFLSGSGYNLSSHSCKLFKLASRQNSFFK 107
            G +  +  + S    +S  C   +L S   S+FK
Sbjct: 144 YGRSYRLRCTSS----TSWKC---RLTSISESYFK 171


>SB_30310| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 990

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 36/134 (26%), Positives = 49/134 (36%), Gaps = 12/134 (8%)
 Frame = +2

Query: 188  KYRGVGAGQRQDYVHHRSKSAGQPCGFWFSDFGTIKRAKSTTLAXFXAXNXETFTN---- 355
            KYR VGA  +     H S   G PC FW       K  KST        N    T+    
Sbjct: 792  KYRKVGAVIKM--FRHPSHDVGAPC-FWKIGKEEEKTMKSTRPQNMHGWNTHRRTSYGCS 848

Query: 356  --------TTIYLATFCKDTCKAIFL*KWNQTCAFICRIRTKLANANMLIRRFYIINRDT 511
                    TT + +T     C  +F        + +CR R K+    + I    I ++ T
Sbjct: 849  KQKQTQLVTTGFRSTCPCSQCNGLFASSNMILDSKLCRQRRKIGQFGIPILEVNITSQAT 908

Query: 512  TDQFTPPEKSETFL 553
               +TP +  E FL
Sbjct: 909  LSPYTPEDVDEQFL 922


>SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25)
          Length = 941

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
 Frame = -1

Query: 256 LPCTLGPMVYVVLP--LAGSNTTIFLSGSGY--NLSSHSCKLFKLASRQNSFFKNLPSKQ 89
           L C L   V+V+ P    G N+ ++++  GY  NLS    ++   A +Q++      +++
Sbjct: 293 LMCCLFEEVHVIKPGTSKGGNSEVYITCCGYTGNLSPQYHEILYTAYQQDT------AEK 346

Query: 88  LQFSIEKLPRFTLIAICSCHNIFVN 14
           + F +  +PR  L  I  C   F+N
Sbjct: 347 VLFPLNSIPREFLYLIKECQEYFIN 371


>SB_47365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 648

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
 Frame = -1

Query: 385 FAKCCQIYCCVCECL--RIXCSKXGQSCAFGTFYGSKVGKPKSAGLPCTLGPMVYVVLPL 212
           + +C   YC    C    +  S    SC   T+Y   +GK  S G P   G MVY+    
Sbjct: 143 YMRCTTSYCYRDSCPGDTVFKSNKWSSCRSMTYYIRALGK--SDGQPINSGDMVYISSGY 200

Query: 211 AGSNTTIFLSGS-GYNLSSHS 152
            G+N  +  S S  YN   +S
Sbjct: 201 YGNNYRLVCSTSTSYNCRFNS 221


>SB_25791| Best HMM Match : GASA (HMM E-Value=9.9)
          Length = 234

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 20/77 (25%), Positives = 29/77 (37%)
 Frame = -2

Query: 447 IRQMNAHVWFHFQRKIALQVSLQNVAKYIVVFVNVSXLXAXKXAKVVLLARFMVPKSENQ 268
           ++     VW +  R I ++ S+  +     V+ N   L      KVV  AR        +
Sbjct: 24  VKSSGLTVWIYDIRGILVEYSILTLRSLSSVWQNAHNLDITSSLKVVSAARCKEASHVTK 83

Query: 267 NPQGCPALLDRWCT*SC 217
            P  CP    RW T  C
Sbjct: 84  TPVSCPD-FSRWKTAEC 99


>SB_15835| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
 Frame = +1

Query: 394 QSDFPLKMEPNVCIHL---PDKNKTSEREHVDSSVLHNQPRHNGSIYATGKIRNVPLDMQ 564
           QS+F L + P   + L   PD +    RE+ D+ +L     ++ +I  +  I    LD+Q
Sbjct: 228 QSEFVLHLSPENHLLLKLNPDLSIQIMREYTDNCLLFGSVLNDKAIVVSMMINGDSLDLQ 287

Query: 565 RMSVEDFDRLFEM 603
            + +E    + EM
Sbjct: 288 SLDLESGKEISEM 300


>SB_7214| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 505

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
 Frame = +1

Query: 421 PNVCIHLPDKNKTSEREHVDSSVLHN-----QPRHNGSIYATGKIRNVPLDMQRMSVEDF 585
           P +  H+ D  + +   H+  S  HN      PRHN  IY + ++     D  R+S   F
Sbjct: 286 PLLSTHIFDSPRNNT--HIFDSPRHNTHIFDSPRHNTHIYGSRRLSTHIFDSPRLSTHIF 343

Query: 586 D--RLFEMDKIDGPSEE 630
           D  RL +   I  PS +
Sbjct: 344 DSPRLSQHSHIRLPSTQ 360


>SB_22062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/59 (33%), Positives = 32/59 (54%)
 Frame = -3

Query: 293 LWFQSRKTKIRRAALHSWTDGVRSLAVGRLQHHDIFIGLGIQLVFPFVQTIQISQSTKF 117
           +WFQ+R+TK +R AL   T+  ++     L+  DI + L   L +   QT + S+ T F
Sbjct: 178 VWFQNRRTKWKRQALEGNTNMHKNPLSPYLKKPDIQVALVRYLPY---QTYRTSRYTVF 233


>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 613

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 269 WFSDFGTIKRAKSTTLAXFXAXNXETFTNTTIYLATFCKDT 391
           WF   GT+ RA +     F      TFT+  I + TF KDT
Sbjct: 307 WFDKDGTL-RAINPESGFFGVCPGTTFTSNPIAMKTFQKDT 346


>SB_13700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -1

Query: 337 IXCSKXGQSCAFGTFYGSKVGKPKSAGLPCTLGPMVYVVLP 215
           I C+K G+ C   + + S+ G  ++  L C    ++Y++ P
Sbjct: 269 IQCTKNGKICPRNSHFPSEGGTFENNALVCKFMKVIYIIRP 309


>SB_34041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 951

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -1

Query: 373 CQIYCCVCECLR--IXCSKXGQSCAFGTFYGSKVGKPKSAGLPCT 245
           C ++ CV  CL+  + C++ GQ C     YG +  K   AG P T
Sbjct: 69  CHMFLCV-HCLKENVACTQNGQCCGGQCTYG-RCKKDAVAGAPGT 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,520,409
Number of Sequences: 59808
Number of extensions: 530903
Number of successful extensions: 1433
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1431
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)