Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120667.seq
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32275-1|AAA75370.1|  982|Caenorhabditis elegans serine-threonin...    31   1.0  
U11280-5|AAA19437.1|  982|Caenorhabditis elegans Protein kinase ...    31   1.0  
Z46266-14|CAA86419.1| 1048|Caenorhabditis elegans Hypothetical p...    29   2.4  
Z46266-10|CAA86416.1| 1207|Caenorhabditis elegans Hypothetical p...    29   2.4  
Z37979-5|CAA86037.1| 1048|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z37979-1|CAA86034.1| 1207|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z37140-8|CAA85503.1| 1207|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AB011281-1|BAA24961.1|  254|Caenorhabditis elegans GAP-2-5 protein.    29   2.4  
Z82053-9|CAJ85768.1|  189|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z82053-8|CAB61018.2|  309|Caenorhabditis elegans Hypothetical pr...    28   7.3  
L08970-1|AAA53660.1|  627|Caenorhabditis elegans choline acetylt...    28   7.3  
L08969-1|AAA53659.1|  627|Caenorhabditis elegans choline acetylt...    28   7.3  
AL023844-6|CAA19532.1|  551|Caenorhabditis elegans Hypothetical ...    28   7.3  
AF070968-1|AAD15926.1|  309|Caenorhabditis elegans PAR-6 protein.      28   7.3  
AF036701-3|AAB88370.1|  627|Caenorhabditis elegans Abnormal chol...    28   7.3  

>U32275-1|AAA75370.1|  982|Caenorhabditis elegans serine-threonine
           kinase protein.
          Length = 982

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +1

Query: 541 RNVPLDMQRMSVEDFDRLFEMDKIDGPSEEIKMYMMGTIDGVKYGKEMQMT 693
           +N  LD ++  +ED ++  +  K     +++K+Y    +   KY KE Q T
Sbjct: 592 QNNELDKRKKDIEDGEKKMKKTKNSQNQQQMKLYSAQQLKEYKYNKEAQKT 642


>U11280-5|AAA19437.1|  982|Caenorhabditis elegans Protein kinase
           protein 18, isoforma protein.
          Length = 982

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +1

Query: 541 RNVPLDMQRMSVEDFDRLFEMDKIDGPSEEIKMYMMGTIDGVKYGKEMQMT 693
           +N  LD ++  +ED ++  +  K     +++K+Y    +   KY KE Q T
Sbjct: 592 QNNELDKRKKDIEDGEKKMKKTKNSQNQQQMKLYSAQQLKEYKYNKEAQKT 642


>Z46266-14|CAA86419.1| 1048|Caenorhabditis elegans Hypothetical
           protein ZK899.8e protein.
          Length = 1048

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +1

Query: 307 HNFGXFXSXQXGDIHKHNNIFGNILQRHLQSDFPLKMEPNVCIHLPDKNKTSEREHVDSS 486
           HN     S    ++++  N +GN+L R  +S+ PLK   +V     +K+     +H    
Sbjct: 68  HNLSTRLSGSTQNLNQPTNAYGNLLSRPFRSN-PLKRTKSV--SKMEKSLAEANQHSLHR 124

Query: 487 V-LHNQPRHNGSIYA 528
           V   N P  + S+YA
Sbjct: 125 VDASNTPSRDSSLYA 139


>Z46266-10|CAA86416.1| 1207|Caenorhabditis elegans Hypothetical
           protein ZK899.8a protein.
          Length = 1207

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +1

Query: 307 HNFGXFXSXQXGDIHKHNNIFGNILQRHLQSDFPLKMEPNVCIHLPDKNKTSEREHVDSS 486
           HN     S    ++++  N +GN+L R  +S+ PLK   +V     +K+     +H    
Sbjct: 227 HNLSTRLSGSTQNLNQPTNAYGNLLSRPFRSN-PLKRTKSV--SKMEKSLAEANQHSLHR 283

Query: 487 V-LHNQPRHNGSIYA 528
           V   N P  + S+YA
Sbjct: 284 VDASNTPSRDSSLYA 298


>Z37979-5|CAA86037.1| 1048|Caenorhabditis elegans Hypothetical
           protein ZK899.8e protein.
          Length = 1048

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +1

Query: 307 HNFGXFXSXQXGDIHKHNNIFGNILQRHLQSDFPLKMEPNVCIHLPDKNKTSEREHVDSS 486
           HN     S    ++++  N +GN+L R  +S+ PLK   +V     +K+     +H    
Sbjct: 68  HNLSTRLSGSTQNLNQPTNAYGNLLSRPFRSN-PLKRTKSV--SKMEKSLAEANQHSLHR 124

Query: 487 V-LHNQPRHNGSIYA 528
           V   N P  + S+YA
Sbjct: 125 VDASNTPSRDSSLYA 139


>Z37979-1|CAA86034.1| 1207|Caenorhabditis elegans Hypothetical
           protein ZK899.8a protein.
          Length = 1207

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +1

Query: 307 HNFGXFXSXQXGDIHKHNNIFGNILQRHLQSDFPLKMEPNVCIHLPDKNKTSEREHVDSS 486
           HN     S    ++++  N +GN+L R  +S+ PLK   +V     +K+     +H    
Sbjct: 227 HNLSTRLSGSTQNLNQPTNAYGNLLSRPFRSN-PLKRTKSV--SKMEKSLAEANQHSLHR 283

Query: 487 V-LHNQPRHNGSIYA 528
           V   N P  + S+YA
Sbjct: 284 VDASNTPSRDSSLYA 298


>Z37140-8|CAA85503.1| 1207|Caenorhabditis elegans Hypothetical
           protein ZK899.8a protein.
          Length = 1207

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +1

Query: 307 HNFGXFXSXQXGDIHKHNNIFGNILQRHLQSDFPLKMEPNVCIHLPDKNKTSEREHVDSS 486
           HN     S    ++++  N +GN+L R  +S+ PLK   +V     +K+     +H    
Sbjct: 227 HNLSTRLSGSTQNLNQPTNAYGNLLSRPFRSN-PLKRTKSV--SKMEKSLAEANQHSLHR 283

Query: 487 V-LHNQPRHNGSIYA 528
           V   N P  + S+YA
Sbjct: 284 VDASNTPSRDSSLYA 298


>AB011281-1|BAA24961.1|  254|Caenorhabditis elegans GAP-2-5 protein.
          Length = 254

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +1

Query: 307 HNFGXFXSXQXGDIHKHNNIFGNILQRHLQSDFPLKMEPNVCIHLPDKNKTSEREHVDSS 486
           HN     S    ++++  N +GN+L R  +S+ PLK   +V     +K+     +H    
Sbjct: 68  HNLSTRLSGSTQNLNQPTNAYGNLLSRPFRSN-PLKRTKSV--SKMEKSLAEANQHSLHR 124

Query: 487 V-LHNQPRHNGSIYA 528
           V   N P  + S+YA
Sbjct: 125 VDASNTPSRDSSLYA 139


>Z82053-9|CAJ85768.1|  189|Caenorhabditis elegans Hypothetical
           protein T26E3.3b protein.
          Length = 189

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 144 SLHEWEDKLYPEPDKNIVVLEPANGKTTYTIGPRVQGSP 260
           +L +  D +       I+ ++PAN + T + GP  QG+P
Sbjct: 106 TLDQVTDMMVANAHNLIITVKPANQRNTLSRGPSQQGTP 144


>Z82053-8|CAB61018.2|  309|Caenorhabditis elegans Hypothetical
           protein T26E3.3a protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 144 SLHEWEDKLYPEPDKNIVVLEPANGKTTYTIGPRVQGSP 260
           +L +  D +       I+ ++PAN + T + GP  QG+P
Sbjct: 226 TLDQVTDMMVANAHNLIITVKPANQRNTLSRGPSQQGTP 264


>L08970-1|AAA53660.1|  627|Caenorhabditis elegans choline
           acetyltransferase protein.
          Length = 627

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 178 SGYNLSSHSCKLFKLA-SRQNSFFKNLPSKQLQFSIEKLPRFTL 50
           SGY + +H C LF LA  R+ +  +++PS  L     ++ RF L
Sbjct: 512 SGYGVDNHLCALFCLAREREETTGEDIPSLFLDPLWSEVMRFPL 555


>L08969-1|AAA53659.1|  627|Caenorhabditis elegans choline
           acetyltransferase protein.
          Length = 627

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 178 SGYNLSSHSCKLFKLA-SRQNSFFKNLPSKQLQFSIEKLPRFTL 50
           SGY + +H C LF LA  R+ +  +++PS  L     ++ RF L
Sbjct: 512 SGYGVDNHLCALFCLAREREETTGEDIPSLFLDPLWSEVMRFPL 555


>AL023844-6|CAA19532.1|  551|Caenorhabditis elegans Hypothetical
           protein Y48A6B.8 protein.
          Length = 551

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -3

Query: 317 PKLCFWHVLWFQSRKTKIRRAALHSWTDGVRSLAVGRLQHHDI 189
           P  C  H+ W Q RK + +   + +  + V   A G+   HD+
Sbjct: 497 PSYCEHHLKWGQVRKFREQHQRMETSPEEVIRFATGQRNEHDV 539


>AF070968-1|AAD15926.1|  309|Caenorhabditis elegans PAR-6 protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 144 SLHEWEDKLYPEPDKNIVVLEPANGKTTYTIGPRVQGSP 260
           +L +  D +       I+ ++PAN + T + GP  QG+P
Sbjct: 226 TLDQVTDMMVANAHNLIITVKPANQRNTLSRGPSQQGTP 264


>AF036701-3|AAB88370.1|  627|Caenorhabditis elegans Abnormal choline
           acetyltransferaseprotein 1, isoform b protein.
          Length = 627

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 178 SGYNLSSHSCKLFKLA-SRQNSFFKNLPSKQLQFSIEKLPRFTL 50
           SGY + +H C LF LA  R+ +  +++PS  L     ++ RF L
Sbjct: 512 SGYGVDNHLCALFCLAREREETTGEDIPSLFLDPLWSEVMRFPL 555


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,676,461
Number of Sequences: 27780
Number of extensions: 413065
Number of successful extensions: 1207
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)