Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120667.seq
(694 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF004842-1|AAD01205.1| 598|Apis mellifera major royal jelly pro... 25 0.90
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.6
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 3.6
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 22 4.8
AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor p... 22 6.4
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 22 6.4
M29492-1|AAA27727.1| 74|Apis mellifera protein ( Bee homeobox-... 21 8.4
M29490-1|AAA27725.1| 109|Apis mellifera protein ( Bee homeobox-... 21 8.4
M29489-1|AAA27724.1| 109|Apis mellifera protein ( Bee homeobox-... 21 8.4
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 21 8.4
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 21 8.4
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 8.4
AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protei... 21 8.4
>AF004842-1|AAD01205.1| 598|Apis mellifera major royal jelly
protein MRJP5 protein.
Length = 598
Score = 24.6 bits (51), Expect = 0.90
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 559 MQRMSVED-FDRLFEMDKIDGPSEEIKMYMMGTID 660
M RM D DR+ MD++D +M+ M T+D
Sbjct: 396 MDRMDTMDTMDRIDRMDRMDRIDRIDRMHTMDTMD 430
Score = 21.4 bits (43), Expect = 8.4
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Frame = +1
Query: 433 IHLPDKNKTSEREHVDSSVLHNQPRHNGSIYATGKIRNVPLDMQRMSVED-FDRLFEMDK 609
+HLP NK + ++ N+ I ++ M M D DR+ MD+
Sbjct: 361 MHLPQSNKMNRMHRMNRVNRVNRMDRMDRIDRMDRMDR----MDTMDTMDRIDRMDRMDR 416
Query: 610 IDGPSEEIKMYMMGTID 660
ID M M T+D
Sbjct: 417 IDRIDRMHTMDTMDTMD 433
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 221 DYVHHRSKSAGQPCGFWFSDFGT 289
D + H++ +A P G+ S FGT
Sbjct: 350 DDIRHKNSAANPPSGYIRSAFGT 372
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 221 DYVHHRSKSAGQPCGFWFSDFGT 289
D + H++ +A P G+ S FGT
Sbjct: 350 DDIRHKNSAANPPSGYIRSAFGT 372
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 221 DYVHHRSKSAGQPCGFWFSDFGT 289
D + H++ +A P G+ S FGT
Sbjct: 350 DDIRHKNSAANPPSGYIRSAFGT 372
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 221 DYVHHRSKSAGQPCGFWFSDFGT 289
D + H++ +A P G+ S FGT
Sbjct: 350 DDIRHKNSAANPPSGYIRSAFGT 372
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 221 DYVHHRSKSAGQPCGFWFSDFGT 289
D + H++ +A P G+ S FGT
Sbjct: 350 DDIRHKNSAANPPSGYIRSAFGT 372
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 221 DYVHHRSKSAGQPCGFWFSDFGT 289
D + H++ +A P G+ S FGT
Sbjct: 350 DDIRHKNSAANPPSGYIRSAFGT 372
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.8 bits (49), Expect = 1.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 221 DYVHHRSKSAGQPCGFWFSDFGT 289
D + H++ +A P G+ S FGT
Sbjct: 418 DDIRHKNSAANPPSGYIRSAFGT 440
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.8 bits (49), Expect = 1.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 221 DYVHHRSKSAGQPCGFWFSDFGT 289
D + H++ +A P G+ S FGT
Sbjct: 418 DDIRHKNSAANPPSGYIRSAFGT 440
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 22.6 bits (46), Expect = 3.6
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 217 PLAGSNTTIFLSGSGYNLSSHSCKLFKLASRQNS 116
P+ GS + SGS NLSS S ASR+N+
Sbjct: 594 PINGSGASG--SGSAENLSSGSNNQTSSASRENT 625
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 22.2 bits (45), Expect = 4.8
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = -3
Query: 242 WTDGVRSLAVGRLQHHD 192
WTDG+ +A+ + HD
Sbjct: 371 WTDGIFGMALSPVDIHD 387
>AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor
protein.
Length = 139
Score = 21.8 bits (44), Expect = 6.4
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -3
Query: 398 LCKCLCKMLPNIL 360
+CKC CK N L
Sbjct: 77 ICKCFCKRRTNTL 89
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 21.8 bits (44), Expect = 6.4
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -3
Query: 398 LCKCLCKMLPNIL 360
+CKC CK N L
Sbjct: 525 ICKCFCKRRTNTL 537
>M29492-1|AAA27727.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H40. ).
Length = 74
Score = 21.4 bits (43), Expect = 8.4
Identities = 6/12 (50%), Positives = 11/12 (91%)
Frame = -3
Query: 293 LWFQSRKTKIRR 258
+WFQ+R+TK ++
Sbjct: 54 IWFQNRRTKWKK 65
>M29490-1|AAA27725.1| 109|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone E30. ).
Length = 109
Score = 21.4 bits (43), Expect = 8.4
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 184 IKISWCWSRPTARLRTPSVQECRAALRILVFRLWNHKT 297
IKI W + A+++ S Q+ AL+++ L+NH T
Sbjct: 64 IKI-W-FQNKRAKIKKASGQKNPLALQLMAQGLYNHST 99
>M29489-1|AAA27724.1| 109|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone E60. ).
Length = 109
Score = 21.4 bits (43), Expect = 8.4
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 184 IKISWCWSRPTARLRTPSVQECRAALRILVFRLWNHKT 297
IKI W + A+++ S Q+ AL+++ L+NH T
Sbjct: 64 IKI-W-FQNKRAKIKKASGQKNPLALQLMAQGLYNHST 99
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 21.4 bits (43), Expect = 8.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -1
Query: 232 VYVVLPLAGSNTTIFLSGSGYNLSS 158
+Y+VLP+ IF++G N+S+
Sbjct: 50 LYIVLPITVIYAVIFVTGLVGNVST 74
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 21.4 bits (43), Expect = 8.4
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = +1
Query: 142 IVCTNGKTSCIPSPIKISWC 201
+V ++G SC+PS ++ C
Sbjct: 150 LVFSSGSVSCVPSVKHVAKC 169
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.4 bits (43), Expect = 8.4
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +2
Query: 191 YRGVGAGQRQDYVHHRSKSA 250
Y G+G G D ++ R+K +
Sbjct: 1440 YNGIGTGDPSDMLNTRTKGS 1459
>AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protein
kinase foraging protein.
Length = 678
Score = 21.4 bits (43), Expect = 8.4
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -1
Query: 169 NLSSHSCKLFKLASRQNSFFKNLPSKQLQ 83
N S +L K A N F KNL Q++
Sbjct: 84 NKRDRSRELIKAAILANDFMKNLELTQIR 112
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,341
Number of Sequences: 438
Number of extensions: 5109
Number of successful extensions: 29
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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