Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120667.seq
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18960.1 68418.m02252 far-red impaired responsive protein, pu...    29   2.9  
At3g06250.1 68416.m00718 far-red impaired responsive protein, pu...    28   5.1  
At1g63500.1 68414.m07180 protein kinase-related low similarity t...    28   5.1  
At3g06350.1 68416.m00733 dehydroquinate dehydratase, putative / ...    28   6.8  
At1g65990.1 68414.m07488 type 2 peroxiredoxin-related / thiol sp...    27   8.9  
At1g50180.1 68414.m05627 disease resistance protein (CC-NBS-LRR ...    27   8.9  
At1g19110.1 68414.m02377 inter-alpha-trypsin inhibitor heavy cha...    27   8.9  

>At5g18960.1 68418.m02252 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 788

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/49 (22%), Positives = 26/49 (53%)
 Frame = +1

Query: 208 RPTARLRTPSVQECRAALRILVFRLWNHKTCQKHNFGXFXSXQXGDIHK 354
           +P  + + P  ++CR    + VFR++ ++  Q +N+    + + G I +
Sbjct: 613 QPFLQTKEPVEEQCRRLYTLTVFRIFQNELVQSYNYLCLKTYEEGAISR 661


>At3g06250.1 68416.m00718 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
           contains Pfam:PF03101 domain: FAR1 family
          Length = 764

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/49 (20%), Positives = 25/49 (51%)
 Frame = +1

Query: 208 RPTARLRTPSVQECRAALRILVFRLWNHKTCQKHNFGXFXSXQXGDIHK 354
           +P  + + P  ++CR    + +FR++  +  Q +N+    + + G I +
Sbjct: 589 QPFLQTKEPVEEQCRRLYTLTIFRIFQSELAQSYNYLGLKTYEEGAISR 637


>At1g63500.1 68414.m07180 protein kinase-related low similarity to
           protein kinase [Arabidopsis thaliana]; contains Pfam
           profile: PF00069 Eukaryotic protein kinase domain
          Length = 422

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = +3

Query: 54  VKRGNFSILNCSCFEGRFLKNEFCRLANLNS-LHEWEDKLYPEPDKNIVVLEPANGKTTY 230
           ++  N  +L  SC EG+F  ++   L  L S   ++E +  P P   +  + P   K   
Sbjct: 195 IRDRNIQMLIDSCLEGQFSSDDGTELIRLASRCLQYEPRERPNPKSLVTAMIPLQ-KDLE 253

Query: 231 TIGPRVQGSPADFGFPTLEP 290
           T   ++ G P+      L P
Sbjct: 254 TPSHQLMGIPSSASTTPLSP 273


>At3g06350.1 68416.m00733 dehydroquinate dehydratase, putative /
           shikimate dehydrogenase, putative similar to
           dehydroquinate dehydratase/shikimate dehydrogenase
           [Nicotiana tabacum][GI:535771], dehydroquinate
           dehydratase/shikimate:NADP oxidoreductase [Lycopersicon
           esculentum][GI:3169883]
          Length = 603

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = -1

Query: 340 RIXCSKXGQSCAFGTFYGSKVGKP 269
           RI CSK G    FGT   SKV  P
Sbjct: 279 RILCSKFGGYLTFGTLDSSKVSAP 302


>At1g65990.1 68414.m07488 type 2 peroxiredoxin-related / thiol
           specific antioxidant / mal allergen family protein
           similar to type 2 peroxiredoxin [Brassica rapa subsp.
           pekinensis] GI:4928472; contains Pfam profiles PF00646:
           F-box domain, PF00578: AhpC/TSA family
          Length = 553

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 163 SSHSCKLFKLASRQNSFFKNLPSKQLQFSIEKLPRFTLIAI 41
           S   C LF+L     +   NLP+  L+  I ++PR  + A+
Sbjct: 142 SGGDCSLFQLMKMTTTTMSNLPTDLLEEIISRVPRKYMRAV 182


>At1g50180.1 68414.m05627 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 857

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 57  KRGNFSILNCSCFEGRFLKNEFCRLANLNSLHEW 158
           K  N  IL    FEG F+ ++ C   NL +L EW
Sbjct: 753 KLPNLKILQL--FEGSFVGSKLCCSKNLENLEEW 784


>At1g19110.1 68414.m02377 inter-alpha-trypsin inhibitor heavy
           chain-related similar to SP|Q61704 Inter-alpha-trypsin
           inhibitor heavy chain H3 precursor {Mus musculus};
           contains Pfam profile PF00092: von Willebrand factor
           type A domain
          Length = 754

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
 Frame = -1

Query: 400 RFASVFAKCCQIYC--CVCECLRIXCSKXGQSC 308
           +F    + CC   C  C C C    CSK    C
Sbjct: 692 KFVKAASSCCVSLCNKCCCMCCVQCCSKLNDQC 724


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,285,700
Number of Sequences: 28952
Number of extensions: 362878
Number of successful extensions: 1020
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)