Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120662.seq
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    27   1.9  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    26   4.4  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    26   4.4  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    26   4.4  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    26   5.9  
SPCC18B5.06 |erf1|sup45|translation release factor eRF1|Schizosa...    26   5.9  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    25   7.8  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    25   7.8  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   7.8  

>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -3

Query: 210 IQFVAKHVNKIGASVTFARYALPKRVILQIEQIDTIVGRFDGQFNYF 70
           + F+ KH  K       + Y+LP  + L    I TI+G  D   ++F
Sbjct: 227 LSFILKHAQKYRLIDAISYYSLPLAIPLLCSGIGTIIGVDDLLMSFF 273


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 396 FAAPTTRGYCNFWIFLPCP 340
           F  P  +  C  W+FL CP
Sbjct: 493 FIIPIAKNVCYLWVFLYCP 511


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 95  LPTIVSICSICKMTRFGSAYRANVTDAPILFTC 193
           LP ++ +CS+ K     ++  ANVT A IL  C
Sbjct: 368 LPNLLKVCSVTKKL---ASQAANVTFAAILVNC 397


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 1   RHESNDMAPTQGLQRALKQKEYIKIIELAVKSPNNRVY--LLNLQDDTFWKRIS 156
           RH  N    + G+   L QK++ K +  A+  P   ++   +  +DD F++ +S
Sbjct: 439 RHNPNGSKQSAGIVTTLYQKDFAK-LNRAMNLPTKNLFNACIGAKDDLFFRYLS 491


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 80  SIIFIYSFCFKARCSPWVGAMSLLSC 3
           SIIFI+ +CFK   + WV     ++C
Sbjct: 408 SIIFIHIYCFK--ITSWVNLYGWITC 431


>SPCC18B5.06 |erf1|sup45|translation release factor
           eRF1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 22/107 (20%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
 Frame = +3

Query: 108 CLFAQFAR*HVLEAHIARMLRTRRFYSRVSQQIGLENYFNFAVVDNNRQRFKSHLIWSLV 287
           CL   +    +L   I +++  +R     + Q GL+ +++      N +     L   ++
Sbjct: 150 CLITDYMT--ILRQRIDQVIPRKRRGDSSAYQKGLDKFYDSVFQSINSEFDFDKLKVVIL 207

Query: 288 SEQKFLTQ---DFILAFGDLLDMEEISKNYNN-LVLSVQQKYAHKLN 416
           +   F+ +   D+I +    LD+++I K+ N  ++L     + H LN
Sbjct: 208 ASPGFVARGLYDYIFSMAVKLDLKQIVKSKNKFVILHSSTGHIHSLN 254


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 202 KLDWKIISILPLSITIAKGL 261
           K+DW+  S +P+S  +A GL
Sbjct: 696 KVDWEAASFIPVSYVLAGGL 715


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 186 NKIGASVTFARYALPKRVILQIEQID 109
           +K+GA+ T A  + PK +ILQ  + D
Sbjct: 505 SKLGATTTTAMKSFPKVLILQANRFD 530


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +1

Query: 25  PTQGLQRALKQKEYIKIIELAVKSPNNRVYLLNLQDDTF 141
           P++GL++  +  +Y+K+I    K     V  ++  + TF
Sbjct: 513 PSRGLRKRFRHGDYVKVIAGKYKDDTGMVVRISKDEVTF 551


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,992,826
Number of Sequences: 5004
Number of extensions: 63105
Number of successful extensions: 177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)