Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120662.seq
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0120 - 18349131-18349880,18349972-18350259,18350383-18350568     33   0.28 
12_02_0410 + 18701258-18701327,18701398-18701630,18701782-187026...    32   0.37 
04_04_0075 - 22542486-22542882,22543181-22543362,22543452-225436...    29   3.5  
01_02_0095 - 11076493-11077644,11077845-11077918,11078155-11078320     29   4.6  

>01_05_0120 - 18349131-18349880,18349972-18350259,18350383-18350568
          Length = 407

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 12/52 (23%), Positives = 29/52 (55%)
 Frame = +2

Query: 500 VQIKHLNAALINDASCMENVNLSAYMQDCVKISDALILYCLREGRVQELKLI 655
           ++I H++  L+N +  ++    + +  +C  + + L+L  ++ G V  LKL+
Sbjct: 125 IEILHIDNVLVNGSGTLDGQGAAVWKDECKILPNTLVLDYVKNGTVSGLKLV 176


>12_02_0410 +
           18701258-18701327,18701398-18701630,18701782-18702639,
           18703006-18703865,18704285-18704395,18704486-18704567,
           18704643-18704735,18704795-18704989
          Length = 833

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +2

Query: 83  WPS-NLPTIVSICS--ICKMTRFGSAYRANVTDAP-ILFT 190
           WP    P++ ++CS  +CKM R    YR   TD P IL++
Sbjct: 737 WPCYKRPSLTNLCSYYVCKMLRVNGRYRTEFTDLPSILYS 776


>04_04_0075 -
           22542486-22542882,22543181-22543362,22543452-22543637,
           22543959-22544057,22546198-22546314,22547739-22547855
          Length = 365

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = -2

Query: 394 CCTDNTRLL*FLDISSMSNKSPNASIKSCVKNFCS----DTNDQIKCD 263
           C T   R   F D+S   +   N+SI SC+KNFCS    +  D+  CD
Sbjct: 185 CETVTARDETFFDLSV--DIEQNSSITSCLKNFCSTETLNAEDKFFCD 230


>01_02_0095 - 11076493-11077644,11077845-11077918,11078155-11078320
          Length = 463

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 228 N*NNFPIQFVAKHVNKIGASVTFARYALPKRVILQIEQIDTIVGRFDG 85
           N ++  +Q +   VN  G S+T+ARYAL   ++  +  I+     F G
Sbjct: 73  NFSHMEVQLMDWMVNTKGMSMTYARYALHLELLYSVYGIEAAEEYFSG 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,617,739
Number of Sequences: 37544
Number of extensions: 372633
Number of successful extensions: 891
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)