Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120662.seq
(686 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62) 32 0.50
SB_17243| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_50623| Best HMM Match : NAD_Gly3P_dh_C (HMM E-Value=0) 30 2.0
SB_12369| Best HMM Match : S-antigen (HMM E-Value=0.11) 29 2.7
SB_53411| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_43814| Best HMM Match : RRM_1 (HMM E-Value=1.3) 28 8.1
SB_5338| Best HMM Match : rve (HMM E-Value=0.0034) 28 8.1
SB_43937| Best HMM Match : Lipoprotein_17 (HMM E-Value=8.4) 28 8.1
SB_10201| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_5694| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_4460| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62)
Length = 1110
Score = 31.9 bits (69), Expect = 0.50
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +3
Query: 282 LVSEQKFLTQDFILAFGDLL-DMEEISKNYNNLVLSVQQKYAHKL 413
L+SEQKF L +G ++ ++E IS+ +N+ +SVQQ YA L
Sbjct: 72 LISEQKFQQ----LGWGAVVANLESISREFNDRAVSVQQSYAEFL 112
>SB_17243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 31.1 bits (67), Expect = 0.87
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 342 DMEEISKNYNNLVLSVQQKYAHKLNWKRIVASHILLKEWFKEPIKQY 482
+ME ++K ++ VL QQ+ A K NW+ + I K + + + +Y
Sbjct: 129 EMETLTKKNSSEVLETQQRQASKKNWEILFTLQITNKRVYMQYLPKY 175
>SB_50623| Best HMM Match : NAD_Gly3P_dh_C (HMM E-Value=0)
Length = 358
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +2
Query: 485 RLRLCVQIKHLNAALINDASCMENVNLSAYMQDCVKISDALILYCLREG 631
+L + KH+N + D EN++ + + +CVK +D L+ +G
Sbjct: 53 KLTEIINTKHMNVKYLPDFLIPENIHANPDVVECVKDADILVFVVPHQG 101
>SB_12369| Best HMM Match : S-antigen (HMM E-Value=0.11)
Length = 1123
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 186 SRVSQQIGLENYFNFAVVDNNRQRFKSHLIWSLVSEQKFLTQDFIL 323
S S+ + N FNFAV+DN R + I + KF + F++
Sbjct: 875 SNTSENSWIPNRFNFAVIDNPTVRKEKRCINDFFTIDKFNKKKFLI 920
>SB_53411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 556
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 348 PCPTSRQTRV*NLASKIFAQTPTTKS 271
PCPTSRQT + + K+ + TP+T +
Sbjct: 175 PCPTSRQTHMDGI-KKLVSSTPSTST 199
>SB_43814| Best HMM Match : RRM_1 (HMM E-Value=1.3)
Length = 642
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 527 LINDASCMENVNLSAYMQDCVKISDALILYCLRE 628
L+ND CMEN L +Y+Q ++ L C R+
Sbjct: 496 LLNDDHCMENPTLVSYLQKLYNDKESFAL-CFRK 528
>SB_5338| Best HMM Match : rve (HMM E-Value=0.0034)
Length = 537
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 375 LVLSVQQKYAHKLNWKRIVASHILLKEWFKE 467
LVLS+ + +KL K ++ H+ L+ W++E
Sbjct: 81 LVLSILRNLTNKLRNKLLMNLHVRLRRWWRE 111
>SB_43937| Best HMM Match : Lipoprotein_17 (HMM E-Value=8.4)
Length = 311
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 527 LINDASCMENVNLSAYMQDCVKISDALILYCLRE 628
L+ND CMEN L +Y+Q ++ L C R+
Sbjct: 159 LLNDDHCMENPTLVSYLQKLYNDKESFAL-CFRK 191
>SB_10201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1162
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 527 LINDASCMENVNLSAYMQDCVKISDALILYCLRE 628
L+ND CMEN L +Y+Q ++ L C R+
Sbjct: 554 LLNDDHCMENPTLVSYLQKLYNDKESFAL-CFRK 586
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 155 RANVTDAPILFTCFATNWIGKLFQFC 232
RAN T+AP+L T FA W+ Q+C
Sbjct: 1490 RANCTNAPLLRTLFAKLWLTS--QYC 1513
>SB_5694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1113
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 527 LINDASCMENVNLSAYMQDCVKISDALILYCLRE 628
L+ND CMEN L +Y+Q ++ L C R+
Sbjct: 651 LLNDDHCMENPTLVSYLQKLYNDKESFAL-CFRK 683
>SB_4460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 685
Score = 27.9 bits (59), Expect = 8.1
Identities = 22/97 (22%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Frame = +3
Query: 192 VSQQIGLENYFNFAVVDNNRQRFKSHL--IWSLVSEQKFLTQDFILAFGDLLDMEEISKN 365
V+Q + L F A ++ N K HL + SL + + L + + + + ++
Sbjct: 100 VTQIVRLSRKFYAATMEENDDLMK-HLTAMTSLAEQLRELEEQISSRKFATVVLGSLPES 158
Query: 366 YNNLVLSVQQKYAHKLNWKRIVASHILLKEWFKEPIK 476
Y+N + S+ + A +L+W+ + +L++E+ K K
Sbjct: 159 YDNFLTSLNARNAGELDWEMV--KGLLIEEYMKHKEK 193
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,575,244
Number of Sequences: 59808
Number of extensions: 467434
Number of successful extensions: 1353
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1352
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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