Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120662.seq
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g45230.1 68414.m05193 defective chloroplasts and leaves prote...    32   0.41 
At1g34650.1 68414.m04309 homeobox-leucine zipper family protein ...    29   3.8  
At5g35917.1 68418.m04317 cytochrome P450, putative similar to Cy...    28   6.7  
At5g20360.1 68418.m02422 octicosapeptide/Phox/Bem1p (PB1) domain...    28   6.7  
At3g23260.1 68416.m02932 F-box family protein contains Pfam PF00...    28   6.7  
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME...    27   8.8  
At2g35430.1 68415.m04342 zinc finger (CCCH-type) family protein ...    27   8.8  
At1g34160.1 68414.m04237 pentatricopeptide (PPR) repeat-containi...    27   8.8  

>At1g45230.1 68414.m05193 defective chloroplasts and leaves
           protein-related / DCL protein-related similar to
           defective chloroplasts and leaves (DCL) protein
           SP:Q42463 from [Lycopersicon esculentum]
          Length = 219

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = -1

Query: 404 CVFLLHRQHEVIVIFGYFFHVQQVAKREYKILRQKFLLRHQR 279
           C+F++ +  EV V F Y+  ++ + K++Y +    F+LRH R
Sbjct: 173 CMFIVRKDGEV-VDFSYWKCIKGLIKKKYPLYADSFILRHFR 213


>At1g34650.1 68414.m04309 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
            homeobox 1 (GP:12002853) {Picea abies}; contains Pfam
           PF00046: Homeobox domain and Pfam PF01852: START domain
          Length = 708

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 488 LRLCVQIKHLNAALINDASC-MENVNLSAYMQDCVKISDALILYCLREGR 634
           LR C Q+K  +  LI D SC ++NV   +    C K    +++  L  GR
Sbjct: 359 LRTCQQMKE-DLWLIADVSCYLQNVEFESTAPICTKRPSGVLIQALPHGR 407


>At5g35917.1 68418.m04317 cytochrome P450, putative similar to
           Cytochrome P450 79A2 (SP:Q9FLC8) {Arabidopsis thaliana}
          Length = 490

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 309 QDFILAFGDL-LDMEEISKNYNNLVLSVQQKYAHKLNWKRIVASHILLKEWFK 464
           QD + A   L +  E  S+ Y  L ++VQ +       +R+VASH+  K+ FK
Sbjct: 106 QDSVFAIRPLTMGTEYCSRGY--LTIAVQSQGEQWKKMRRVVASHVTSKKSFK 156


>At5g20360.1 68418.m02422 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein / tetratricopeptide repeat
           (TPR)-containing protein contains Pfam profiles PF00564:
           PB1 domain, PF00515: TPR Domain
          Length = 809

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 375 LVLSVQQKYAHKLNWKRIVASHILLKEWFKEPIKQY 482
           L L +QQ    +L+W  ++ SH+ LK W    + Q+
Sbjct: 602 LALGLQQFEEARLSWYYVLVSHLDLKTWPYADVVQF 637


>At3g23260.1 68416.m02932 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain
          Length = 362

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +3

Query: 198 QQIGLENYFNFAVVDNNRQRFKSHLIWSLVSEQKFLTQDFILAFGDLLDMEE---ISKNY 368
           +Q+ L  Y+N++    +   + +  + S+VS  KFLT   I    D+ D      + +  
Sbjct: 252 EQLCLFGYYNWSTTSEDLNVWVTTSLGSVVSWSKFLTIQIIKPRVDMFDYGMSFLVDEQN 311

Query: 369 NNLVLSVQQKYAH 407
            +LV  + QK  H
Sbjct: 312 KSLVCWISQKVLH 324


>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
           protein [Arabidopsis thaliana] GI:21743571; contains
           Pfam profile PF00730: HhH-GPD superfamily base excision
           DNA repair protein
          Length = 1729

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 358 DISSMSNKSPNASIKSCVK 302
           ++  MSNKSP  ++KSC K
Sbjct: 111 NVGDMSNKSPEVTLKSCRK 129


>At2g35430.1 68415.m04342 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 252

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -3

Query: 675 DHGMLWAINFSSCTRPSRKQYKMSASLILTQSCMYADKLTFSIQLASFISAAFKC 511
           D+  +WAIN      PS+K    S+S I      +  KL F  +  +   +A  C
Sbjct: 40  DYSRVWAINSDGAESPSKKTRSSSSSEI--GKSFFKTKLCFKFRAGTCPYSASSC 92


>At1g34160.1 68414.m04237 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 558

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 322 SIKSCVKNFCSDTNDQIKCDLN 257
           ++K+C +  CS   DQ+ C +N
Sbjct: 115 TLKACARALCSSAMDQLHCQIN 136


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,394,686
Number of Sequences: 28952
Number of extensions: 316719
Number of successful extensions: 824
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)