Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120659.seq
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5029| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.1  
SB_21783| Best HMM Match : Keratin_B2 (HMM E-Value=0.81)               28   8.3  
SB_3717| Best HMM Match : UQ_con (HMM E-Value=0.00017)                 28   8.3  

>SB_5029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = -2

Query: 695 KNNNIIWLTLVKY*FSL 645
           KNNNIIWL +VK  FSL
Sbjct: 30  KNNNIIWLKIVKEYFSL 46


>SB_21783| Best HMM Match : Keratin_B2 (HMM E-Value=0.81)
          Length = 316

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 239 YYHYLF***STPFSGPCTISLLKIISIRCSVVIR 340
           YY+Y+       +  PC I+L +++ +RC+V  R
Sbjct: 2   YYYYIV---PCTYGVPCRIALYRVVFVRCTVSCR 32


>SB_3717| Best HMM Match : UQ_con (HMM E-Value=0.00017)
          Length = 123

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 490 LKTLKIYYFNSAERIPFGIISIYC 419
           L T+ +YY ++  RIP+ +  IYC
Sbjct: 42  LLTVWLYYTSTVSRIPYAVERIYC 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,876,217
Number of Sequences: 59808
Number of extensions: 341136
Number of successful extensions: 482
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)