Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120659.seq
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY081955-1|AAL92523.1|  788|Caenorhabditis elegans MAT-1 protein.      29   4.2  
AC006708-14|AAT81172.1|  273|Caenorhabditis elegans Metaphase-to...    29   4.2  
AC006708-13|AAF60415.1|  788|Caenorhabditis elegans Metaphase-to...    29   4.2  
Z81065-4|CAI79162.1|  176|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z81038-18|CAI79154.1|  176|Caenorhabditis elegans Hypothetical p...    28   5.5  

>AY081955-1|AAL92523.1|  788|Caenorhabditis elegans MAT-1 protein.
          Length = 788

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +3

Query: 267 AHLSLARAQFLC*KSYLFVALSSYERKINQ 356
           +H +L  AQ LC +SY+ +AL S ++ +++
Sbjct: 135 SHANLLHAQMLCDESYMDLALESCQKSLDE 164


>AC006708-14|AAT81172.1|  273|Caenorhabditis elegans
           Metaphase-to-anaphase transitiondefect protein 1,
           isoform b protein.
          Length = 273

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +3

Query: 267 AHLSLARAQFLC*KSYLFVALSSYERKINQ 356
           +H +L  AQ LC +SY+ +AL S ++ +++
Sbjct: 135 SHANLLHAQMLCDESYMDLALESCQKSLDE 164


>AC006708-13|AAF60415.1|  788|Caenorhabditis elegans
           Metaphase-to-anaphase transitiondefect protein 1,
           isoform a protein.
          Length = 788

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +3

Query: 267 AHLSLARAQFLC*KSYLFVALSSYERKINQ 356
           +H +L  AQ LC +SY+ +AL S ++ +++
Sbjct: 135 SHANLLHAQMLCDESYMDLALESCQKSLDE 164


>Z81065-4|CAI79162.1|  176|Caenorhabditis elegans Hypothetical
           protein F16C3.4 protein.
          Length = 176

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 400 FSKITTVLLIVKFVS*FIFLSYDDRATNRYDF*QRNCARARERCALLLKK 251
           FS       I  FVS  +FL    R T+RYD   R+  ++++R     KK
Sbjct: 2   FSNFIFSFFIALFVSSLLFLCGKSRITSRYDKKSRSKKQSKKRSNSFSKK 51


>Z81038-18|CAI79154.1|  176|Caenorhabditis elegans Hypothetical
           protein F16C3.4 protein.
          Length = 176

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 400 FSKITTVLLIVKFVS*FIFLSYDDRATNRYDF*QRNCARARERCALLLKK 251
           FS       I  FVS  +FL    R T+RYD   R+  ++++R     KK
Sbjct: 2   FSNFIFSFFIALFVSSLLFLCGKSRITSRYDKKSRSKKQSKKRSNSFSKK 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,671,823
Number of Sequences: 27780
Number of extensions: 286755
Number of successful extensions: 554
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)