Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120656.seq
         (688 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P41709 Cluster: Uncharacterized 9.4 kDa protein in PE38...    73   9e-12
UniRef50_A0BVK0 Cluster: Chromosome undetermined scaffold_13, wh...    34   2.8  
UniRef50_Q9TXW0 Cluster: Seven tm receptor protein 16; n=6; Caen...    33   6.5  
UniRef50_Q64WD5 Cluster: Putative capsular polysaccharide polyme...    33   8.6  

>UniRef50_P41709 Cluster: Uncharacterized 9.4 kDa protein in PE38
           3'region; n=5; Nucleopolyhedrovirus|Rep: Uncharacterized
           9.4 kDa protein in PE38 3'region - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 81

 Score = 72.5 bits (170), Expect = 9e-12
 Identities = 34/44 (77%), Positives = 37/44 (84%), Gaps = 2/44 (4%)
 Frame = -2

Query: 636 QCDIXADKNVVNAYDAXDVDPNKKFIINHNHE--QVDETNKQEV 511
           QCD  ADK+VVNAYD  DVDPNK+FIINHNHE  QV+ETNKQ V
Sbjct: 20  QCDNNADKDVVNAYDTIDVDPNKRFIINHNHEQQQVNETNKQVV 63


>UniRef50_A0BVK0 Cluster: Chromosome undetermined scaffold_13, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_13,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 571

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 10/27 (37%), Positives = 22/27 (81%)
 Frame = -2

Query: 570 KKFIINHNHEQVDETNKQEVVIKLTQQ 490
           K++++N NH Q+D+  K+E++I+L ++
Sbjct: 283 KEYMVNQNHHQIDQLEKEELLIELNEE 309


>UniRef50_Q9TXW0 Cluster: Seven tm receptor protein 16; n=6;
           Caenorhabditis elegans|Rep: Seven tm receptor protein 16
           - Caenorhabditis elegans
          Length = 330

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 17/33 (51%), Positives = 18/33 (54%)
 Frame = +1

Query: 589 SVIRIYNVFICXNVTLINVTAXGILXXXGYNYY 687
           SVIR  NVF   NVT I V   GI+   GY  Y
Sbjct: 196 SVIRWRNVFCTFNVTFIMVVQYGIMIFCGYQLY 228


>UniRef50_Q64WD5 Cluster: Putative capsular polysaccharide
           polymerase; n=1; Bacteroides fragilis|Rep: Putative
           capsular polysaccharide polymerase - Bacteroides
           fragilis
          Length = 345

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 514 FLFVCFIDLFVIMINYKFFVGVNIXSVIRIYNV 612
           F  +C   LF I   ++++VGV+  + ++IYN+
Sbjct: 25  FFLICVFILFSIFSGFRYYVGVDYVNYVKIYNL 57


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 489,875,930
Number of Sequences: 1657284
Number of extensions: 7897818
Number of successful extensions: 13747
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13730
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)